1 Response_reg#1
48-116 aa · 69 aa · 30.4% of protein
Raw token
Response_reg:48:0.000000000000208:116:71:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7U54_RS00375
Response regulator LytTR family
Faecalibacillus intestinalis · GCF_003024685
ClassRRTypeLytTRLength227 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003024685#C7U54_RS00375Stable P2CS identifier used across views.
GenomeGCF_003024685Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 227 aa (70.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 LytTR#2
133-223 aa · 91 aa · 40.1% of protein
Raw token
LytTR:133:2.55e-20:223:97:98- Raw architecture: Response_reg:48:0.000000000000208:116:71:111#LytTR:133:2.55e-20:223:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003024685::NZ_PYLQ01000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span72106-72789Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7U54_00375RefSeq proteinWP_022002914.1
Context group ID
GCF_003024685::NZ_PYLQ01000001.1::G00002Context members
C7U54_RS00375
Partner locus tags
C7U54_RS00375
Partner old locus tags
C7U54_00375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022002914.1Primary protein accession used for annex mappings.
UniProt accessionA0A2T3G6M2Primary UniProt accession resolved in the annex database.
UniProt IDA0A2T3G6M2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7U54_RS00375Primary locus identifier stored in the genes table.
Old locus tagC7U54_00375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PYLQ01000001.1Sequence record reported by the local genomic context database.
Genomic interval72 106-72 789 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span72 106-72 789 ntGCF_003024685::NZ_PYLQ01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003024685::NZ_PYLQ01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PYLQ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span72 106-72 789 nt684 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 106 nt72 789 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C7U54_RS00375GCF_003024685#C7U54_RS00375
RRLytTRCurrent focus
72 106-72 789 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003024685#C7U54_RS00375The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1365496
Simplified PFAM architecture for RROC_1365496
PFAM domain coverage: 157 / 227 aa (69.2%)
1 aa227 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[48-115] | LytTR[134-222]
- Domain count: 2
- Matched identifier: RROC_1365496
- Positioned domains: Response_reg 48-115 ; Response_reg 48-115 ; LytTR 134-222 ; LytTR 134-222
Cluster members and taxonomy
Representative gene: GCF_003024685#C7U54_RS00375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_003024685
AssemblyASM302468v1 · Contighaploid
Genome composition2 793 685 bp · 29,0% GCFaecalibacillus intestinalis
Signal transduction countsGenes 59 · HK 21 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key