1 Response_reg#1
8-120 aa · 113 aa · 42.3% of protein
Raw token
Response_reg:8:0.00000000075:120:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7U54_RS04375
Response regulator Spo0A family
Faecalibacillus intestinalis · GCF_003024685
ClassRRTypeSpo0ALength267 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003024685#C7U54_RS04375Stable P2CS identifier used across views.
GenomeGCF_003024685Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length267 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage217 / 267 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa267 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
149-252 aa · 104 aa · 39.0% of protein
Raw token
Spo0A_C:149:1.04e-60:252:104:104- Raw architecture: Response_reg:8:0.00000000075:120:115:111#Spo0A_C:149:1.04e-60:252:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003024685::NZ_PYLQ01000004.1::G00022
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span56183-56986Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7U54_04370RefSeq proteinWP_022001570.1
Context group ID
GCF_003024685::NZ_PYLQ01000004.1::G00022Context members
C7U54_RS04375
Partner locus tags
C7U54_RS04375
Partner old locus tags
C7U54_04370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022001570.1Primary protein accession used for annex mappings.
UniProt accessionA0A2T3G4T2Primary UniProt accession resolved in the annex database.
UniProt IDA0A2T3G4T2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed8 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7U54_RS04375Primary locus identifier stored in the genes table.
Old locus tagC7U54_04370Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PYLQ01000004.1Sequence record reported by the local genomic context database.
Genomic interval56 183-56 986 nt804 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span56 183-56 986 ntGCF_003024685::NZ_PYLQ01000004.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003024685::NZ_PYLQ01000004.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PYLQ01000004.1All displayed genes belong to this local TCS context.
Neighborhood span56 183-56 986 nt804 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
56 183 nt56 986 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C7U54_RS04375GCF_003024685#C7U54_RS04375
RRSpo0ACurrent focus
56 183-56 986 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003024685#C7U54_RS04375The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0623526
Simplified PFAM architecture for RROC_0623526
PFAM domain coverage: 210 / 267 aa (78.7%)
1 aa267 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[8-113] | Spo0A_C[149-252]
- Domain count: 2
- Matched identifier: RROC_0623526
- Positioned domains: Response_reg 8-113 ; Response_reg 8-113 ; Spo0A_C 149-252 ; Spo0A_C 149-252
Cluster members and taxonomy
Representative gene: GCF_003024685#C7U54_RS04375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_003024685
AssemblyASM302468v1 · Contighaploid
Genome composition2 793 685 bp · 29,0% GCFaecalibacillus intestinalis
Signal transduction countsGenes 59 · HK 21 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key