1 HAMP#1
195-266 aa · 72 aa · 14.1% of protein
Raw token
HAMP:195:0.00000000000657:266:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CUS33_RS13775
Histidine kinase, Classic
Enterococcus faecalis · GCF_002946755
ClassHKTypeClassicLength509 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002946755#CUS33_RS13775Stable P2CS identifier used across views.
GenomeGCF_002946755Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length509 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 509 aa (49.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa509 aa
Domain-by-domain annotation3 items
2 HisKA#2
270-336 aa · 67 aa · 13.2% of protein
Raw token
HisKA:270:0.00000000000000823:336:67:643 HATPase_c#3
384-494 aa · 111 aa · 21.8% of protein
Raw token
HATPase_c:384:7.69e-30:494:111:109- Raw architecture: HAMP:195:0.00000000000657:266:72:69#HisKA:270:0.00000000000000823:336:67:64#HATPase_c:384:7.69e-30:494:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002946755::NZ_PUBH01000058.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1042-3268Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCUS33_13775RefSeq proteinWP_104855352.1
Context group ID
GCF_002946755::NZ_PUBH01000058.1::G00011Context members
CUS33_RS13775CUS33_RS13780
Partner locus tags
CUS33_RS13775CUS33_RS13780
Partner old locus tags
CUS33_13775CUS33_13780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_104855352.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCUS33_RS13775Primary locus identifier stored in the genes table.
Old locus tagCUS33_13775Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PUBH01000058.1Sequence record reported by the local genomic context database.
Genomic interval1 042-2 571 nt1 530 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 042-3 268 ntGCF_002946755::NZ_PUBH01000058.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002946755::NZ_PUBH01000058.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PUBH01000058.1All displayed genes belong to this local TCS context.
Neighborhood span1 042-3 268 nt2 227 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 042 nt3 268 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CUS33_RS13775GCF_002946755#CUS33_RS13775
HKClassicCurrent focus
1 042-2 571 nt · Reverse (-)
CUS33_RS13780GCF_002946755#CUS33_RS13780
RROmpR
2 582-3 268 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002946755#CUS33_RS13775The current gene is the representative for this cluster.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1433404
Simplified PFAM architecture for HKOC_1433404
PFAM domain coverage: 373 / 509 aa (73.3%)
1 aa509 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[45-189] | HAMP[213-265] | HisKA[271-336] | HATPase_c[385-493]
- Domain count: 4
- Matched identifier: HKOC_1433404
- Positioned domains: ArlS_N 45-189 ; HAMP 213-265 ; HisKA 271-336 ; HATPase_c 385-493
Cluster members and taxonomy
Representative gene: GCF_002946755#CUS33_RS13775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 351 · GCF_002946755
AssemblyASM294675v1 · Contighaploid
Genome composition2 775 983 bp · 37,5% GCEnterococcus faecalis
Signal transduction countsGenes 27 · HK 12 · RR 15CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key