1 HisKA_3#1
215-278 aa · 64 aa · 14.2% of protein
Raw token
HisKA_3:215:0.00000000000000617:278:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CYJ38_RS06820
Histidine kinase, Classic
Bifidobacterium breve · GCF_002861455
ClassHKTypeClassicLength451 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002861455#CYJ38_RS06820Stable P2CS identifier used across views.
GenomeGCF_002861455Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length451 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 451 aa (40.6%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
325-443 aa · 119 aa · 26.4% of protein
Raw token
HATPase_c:325:0.000000000223:443:120:109- Raw architecture: HisKA_3:215:0.00000000000000617:278:64:68#HATPase_c:325:0.000000000223:443:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002861455::NZ_PKGQ01000004.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51421-53426Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCYJ38_06820RefSeq proteinWP_101673777.1
Context group ID
GCF_002861455::NZ_PKGQ01000004.1::G00005Context members
CYJ38_RS06820CYJ38_RS06825
Partner locus tags
CYJ38_RS06820CYJ38_RS06825
Partner old locus tags
CYJ38_06820CYJ38_06825
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_101673777.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCYJ38_RS06820Primary locus identifier stored in the genes table.
Old locus tagCYJ38_06820Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PKGQ01000004.1Sequence record reported by the local genomic context database.
Genomic interval51 421-52 776 nt1 356 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span51 421-53 426 ntGCF_002861455::NZ_PKGQ01000004.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002861455::NZ_PKGQ01000004.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PKGQ01000004.1All displayed genes belong to this local TCS context.
Neighborhood span51 421-53 426 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 421 nt53 426 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CYJ38_RS06820GCF_002861455#CYJ38_RS06820
HKClassicCurrent focus
51 421-52 776 nt · Forward (+)
CYJ38_RS06825GCF_002861455#CYJ38_RS06825
RRNarL
52 773-53 426 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002861455#CYJ38_RS06820The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1951994
Simplified PFAM architecture for HKOC_1951994
PFAM domain coverage: 186 / 451 aa (41.2%)
1 aa451 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[215-280] | HATPase_c[323-442]
- Domain count: 2
- Matched identifier: HKOC_1951994
- Positioned domains: HisKA_3 215-280 ; HATPase_c 323-442
Cluster members and taxonomy
Representative gene: GCF_002861455#CYJ38_RS06820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_002861455
AssemblyASM286145v1 · Scaffoldhaploid
Genome composition2 315 004 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 16 · HK 8 · RR 8CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key