1 HisKA#1
180-244 aa · 65 aa · 15.1% of protein
Raw token
HisKA:180:0.0000000000176:244:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CYJ38_RS01930
Histidine kinase, Classic
Bifidobacterium breve · GCF_002861455
ClassHKTypeClassicLength431 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002861455#CYJ38_RS01930Stable P2CS identifier used across views.
GenomeGCF_002861455Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length431 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 431 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
308-420 aa · 113 aa · 26.2% of protein
Raw token
HATPase_c:308:1.22e-29:420:113:109- Raw architecture: HisKA:180:0.0000000000176:244:65:64#HATPase_c:308:1.22e-29:420:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002861455::NZ_PKGQ01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span410650-412768Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCYJ38_01930RefSeq proteinWP_101673268.1
Context group ID
GCF_002861455::NZ_PKGQ01000001.1::G00003Context members
CYJ38_RS01925CYJ38_RS01930
Partner locus tags
CYJ38_RS01925CYJ38_RS01930
Partner old locus tags
CYJ38_01925CYJ38_01930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_101673268.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCYJ38_RS01930Primary locus identifier stored in the genes table.
Old locus tagCYJ38_01930Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PKGQ01000001.1Sequence record reported by the local genomic context database.
Genomic interval411 473-412 768 nt1 296 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span410 650-412 768 ntGCF_002861455::NZ_PKGQ01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002861455::NZ_PKGQ01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PKGQ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span410 650-412 768 nt2 119 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
410 650 nt412 768 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CYJ38_RS01925GCF_002861455#CYJ38_RS01925
RROmpR
410 650-411 354 nt · Reverse (-)
CYJ38_RS01930GCF_002861455#CYJ38_RS01930
HKClassicCurrent focus
411 473-412 768 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002861455#CYJ38_RS01930The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2163520
Simplified PFAM architecture for HKOC_2163520
PFAM domain coverage: 176 / 431 aa (40.8%)
1 aa431 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[180-244] | HATPase_c[309-419]
- Domain count: 2
- Matched identifier: HKOC_2163520
- Positioned domains: HisKA 180-244 ; HATPase_c 309-419
Cluster members and taxonomy
Representative gene: GCF_002861455#CYJ38_RS01930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_002861455
AssemblyASM286145v1 · Scaffoldhaploid
Genome composition2 315 004 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 16 · HK 8 · RR 8CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key