1 HAMP#1
263-331 aa · 69 aa · 10.6% of protein
Raw token
HAMP:263:9.18e-16:331:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CYJ38_RS00310
Histidine kinase, Classic
Bifidobacterium breve · GCF_002861455
ClassHKTypeClassicLength652 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002861455#CYJ38_RS00310Stable P2CS identifier used across views.
GenomeGCF_002861455Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length652 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage287 / 652 aa (44.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
343-412 aa · 70 aa · 10.7% of protein
Raw token
HisKA:343:5.63e-18:412:70:643 HATPase_c#3
476-623 aa · 148 aa · 22.7% of protein
Raw token
HATPase_c:476:4.6e-21:623:148:109- Raw architecture: HAMP:263:9.18e-16:331:69:69#HisKA:343:5.63e-18:412:70:64#HATPase_c:476:4.6e-21:623:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002861455::NZ_PKGQ01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span70282-73015Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCYJ38_00310RefSeq proteinWP_373270963.1
Context group ID
GCF_002861455::NZ_PKGQ01000001.1::G00001Context members
CYJ38_RS00310CYJ38_RS00315
Partner locus tags
CYJ38_RS00310CYJ38_RS00315
Partner old locus tags
CYJ38_00310CYJ38_00315
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_373270963.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCYJ38_RS00310Primary locus identifier stored in the genes table.
Old locus tagCYJ38_00310Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PKGQ01000001.1Sequence record reported by the local genomic context database.
Genomic interval70 282-72 240 nt1 959 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span70 282-73 015 ntGCF_002861455::NZ_PKGQ01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002861455::NZ_PKGQ01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PKGQ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span70 282-73 015 nt2 734 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 282 nt73 015 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CYJ38_RS00310GCF_002861455#CYJ38_RS00310
HKClassicCurrent focus
70 282-72 240 nt · Reverse (-)
CYJ38_RS00315GCF_002861455#CYJ38_RS00315
RROmpR
72 284-73 015 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002861455#CYJ38_RS00310The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0892396
Simplified PFAM architecture for HKOC_0892396
PFAM domain coverage: 268 / 652 aa (41.1%)
1 aa652 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[280-331] | HisKA[344-412] | HATPase_c[476-622]
- Domain count: 3
- Matched identifier: HKOC_0892396
- Positioned domains: HAMP 280-331 ; HisKA 344-412 ; HATPase_c 476-622
Cluster members and taxonomy
Representative gene: GCF_002861455#CYJ38_RS00310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_002861455
AssemblyASM286145v1 · Scaffoldhaploid
Genome composition2 315 004 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 16 · HK 8 · RR 8CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key