1 HAMP#1
155-225 aa · 71 aa · 15.2% of protein
Raw token
HAMP:155:0.0000000956:225:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Tam1G_RS06410
Histidine kinase, Classic
Bifidobacterium imperatoris · GCF_002860405
ClassHKTypeClassicLength466 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002860405#Tam1G_RS06410Stable P2CS identifier used across views.
GenomeGCF_002860405Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length466 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage260 / 466 aa (55.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa466 aa
Domain-by-domain annotation3 items
2 HisKA#2
229-295 aa · 67 aa · 14.4% of protein
Raw token
HisKA:229:0.0000000000563:295:67:643 HATPase_c#3
345-466 aa · 122 aa · 26.2% of protein
Raw token
HATPase_c:345:0.000000000432:466:124:109- Raw architecture: HAMP:155:0.0000000956:225:71:69#HisKA:229:0.0000000000563:295:67:64#HATPase_c:345:0.000000000432:466:124:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002860405::NZ_NMWV01000016.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span56547-58669Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTam1G_1242RefSeq proteinWP_165781927.1
Context group ID
GCF_002860405::NZ_NMWV01000016.1::G00005Context members
Tam1G_RS06410Tam1G_RS06415
Partner locus tags
Tam1G_RS06410Tam1G_RS06415
Partner old locus tags
Tam1G_1242Tam1G_1243
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_165781927.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX7S142Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX7S142_9BIFIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTam1G_RS06410Primary locus identifier stored in the genes table.
Old locus tagTam1G_1242Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMWV01000016.1Sequence record reported by the local genomic context database.
Genomic interval56 547-57 947 nt1 401 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span56 547-58 669 ntGCF_002860405::NZ_NMWV01000016.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002860405::NZ_NMWV01000016.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMWV01000016.1All displayed genes belong to this local TCS context.
Neighborhood span56 547-58 669 nt2 123 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
56 547 nt58 669 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Tam1G_RS06410GCF_002860405#Tam1G_RS06410
HKClassicCurrent focus
56 547-57 947 nt · Reverse (-)
Tam1G_RS06415GCF_002860405#Tam1G_RS06415
RROmpR
57 998-58 669 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002860405#Tam1G_RS06410The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1764163
Simplified PFAM architecture for HKOC_1764163
PFAM domain coverage: 185 / 466 aa (39.7%)
1 aa466 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[230-295] | HATPase_c[346-464]
- Domain count: 2
- Matched identifier: HKOC_1764163
- Positioned domains: HisKA 230-295 ; HATPase_c 346-464
Cluster members and taxonomy
Representative gene: GCF_002860405#Tam1G_RS06410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 020 965 · GCF_002860405
AssemblyASM286040v1 · Contighaploid
Genome composition2 639 899 bp · 56,0% GCBifidobacterium imperatoris
Signal transduction countsGenes 32 · HK 13 · RR 17CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key