1 HAMP#1
267-335 aa · 69 aa · 10.4% of protein
Raw token
HAMP:267:3.5e-16:335:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Tam1G_RS01580
Histidine kinase, Classic
Bifidobacterium imperatoris · GCF_002860405
ClassHKTypeClassicLength661 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002860405#Tam1G_RS01580Stable P2CS identifier used across views.
GenomeGCF_002860405Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length661 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage287 / 661 aa (43.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa661 aa
Domain-by-domain annotation3 items
2 HisKA#2
347-416 aa · 70 aa · 10.6% of protein
Raw token
HisKA:347:2.67e-18:416:70:643 HATPase_c#3
480-627 aa · 148 aa · 22.4% of protein
Raw token
HATPase_c:480:3.28e-21:627:148:109- Raw architecture: HAMP:267:3.5e-16:335:69:69#HisKA:347:2.67e-18:416:70:64#HATPase_c:480:3.28e-21:627:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002860405::NZ_NMWV01000005.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span80104-82931Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTam1G_0307RefSeq proteinWP_101625226.1
Context group ID
GCF_002860405::NZ_NMWV01000005.1::G00012Context members
Tam1G_RS01575Tam1G_RS01580
Partner locus tags
Tam1G_RS01575Tam1G_RS01580
Partner old locus tags
Tam1G_0306Tam1G_0307
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101625226.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5IU28Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5IU28_9BIFIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTam1G_RS01580Primary locus identifier stored in the genes table.
Old locus tagTam1G_0307Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMWV01000005.1Sequence record reported by the local genomic context database.
Genomic interval80 850-82 931 nt2 082 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span80 104-82 931 ntGCF_002860405::NZ_NMWV01000005.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002860405::NZ_NMWV01000005.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMWV01000005.1All displayed genes belong to this local TCS context.
Neighborhood span80 104-82 931 nt2 828 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 104 nt82 931 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Tam1G_RS01575GCF_002860405#Tam1G_RS01575
RROmpR
80 104-80 835 nt · Forward (+)
Tam1G_RS01580GCF_002860405#Tam1G_RS01580
HKClassicCurrent focus
80 850-82 931 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002860405#Tam1G_RS01580The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0870217
Simplified PFAM architecture for HKOC_0870217
PFAM domain coverage: 268 / 661 aa (40.5%)
1 aa661 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[284-335] | HisKA[348-416] | HATPase_c[480-626]
- Domain count: 3
- Matched identifier: HKOC_0870217
- Positioned domains: HAMP 284-335 ; HisKA 348-416 ; HATPase_c 480-626
Cluster members and taxonomy
Representative gene: GCF_002860405#Tam1G_RS01580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 020 965 · GCF_002860405
AssemblyASM286040v1 · Contighaploid
Genome composition2 639 899 bp · 56,0% GCBifidobacterium imperatoris
Signal transduction countsGenes 32 · HK 13 · RR 17CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key