1 Response_reg#1
6-74 aa · 69 aa · 37.7% of protein
Raw token
Response_reg:6:3.76e-25:74:69:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Tam1G_RS00610
Response regulator OmpR family
Bifidobacterium imperatoris · GCF_002860405
ClassRRTypeOmpRLength183 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002860405#Tam1G_RS00610Stable P2CS identifier used across views.
GenomeGCF_002860405Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length183 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage143 / 183 aa (78.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa183 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
106-179 aa · 74 aa · 40.4% of protein
Raw token
Trans_reg_C:106:3.12e-26:179:76:77- Raw architecture: Response_reg:6:3.76e-25:74:69:111#Trans_reg_C:106:3.12e-26:179:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002860405::NZ_NMWV01000002.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26592-28225Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTam1G_0121RefSeq proteinWP_242689663.1
Context group ID
GCF_002860405::NZ_NMWV01000002.1::G00008Context members
Tam1G_RS00610Tam1G_RS00615
Partner locus tags
Tam1G_RS00610Tam1G_RS00615
Partner old locus tags
Tam1G_0121Tam1G_0122
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242689663.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTam1G_RS00610Primary locus identifier stored in the genes table.
Old locus tagTam1G_0121Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMWV01000002.1Sequence record reported by the local genomic context database.
Genomic interval26 592-27 143 nt552 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span26 592-28 225 ntGCF_002860405::NZ_NMWV01000002.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002860405::NZ_NMWV01000002.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMWV01000002.1All displayed genes belong to this local TCS context.
Neighborhood span26 592-28 225 nt1 634 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 592 nt28 225 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Tam1G_RS00610GCF_002860405#Tam1G_RS00610
RROmpRCurrent focus
26 592-27 143 nt · Forward (+)
Tam1G_RS00615GCF_002860405#Tam1G_RS00615
HKClassic
27 152-28 225 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002860405#Tam1G_RS00610The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2181947
Simplified PFAM architecture for RROC_2181947
PFAM domain coverage: 142 / 183 aa (77.6%)
1 aa183 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-73] | Trans_reg_C[106-179]
- Domain count: 2
- Matched identifier: RROC_2181947
- Positioned domains: Response_reg 6-73 ; Response_reg 6-73 ; Trans_reg_C 106-179 ; Trans_reg_C 106-179
Cluster members and taxonomy
Representative gene: GCF_002860405#Tam1G_RS00610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 020 965 · GCF_002860405
AssemblyASM286040v1 · Contighaploid
Genome composition2 639 899 bp · 56,0% GCBifidobacterium imperatoris
Signal transduction countsGenes 32 · HK 13 · RR 17CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key