1 HAMP#1
210-279 aa · 70 aa · 12.1% of protein
Raw token
HAMP:210:1e-16:279:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Tam1G_RS01695
Histidine kinase, Classic
Bifidobacterium imperatoris · GCF_002860405
ClassHKTypeClassicLength577 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002860405#Tam1G_RS01695Stable P2CS identifier used across views.
GenomeGCF_002860405Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length577 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 577 aa (43.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa577 aa
Domain-by-domain annotation3 items
2 HisKA#2
290-357 aa · 68 aa · 11.8% of protein
Raw token
HisKA:290:0.00000000000000891:357:68:643 HATPase_c#3
404-514 aa · 111 aa · 19.2% of protein
Raw token
HATPase_c:404:3.81e-29:514:111:109- Raw architecture: HAMP:210:1e-16:279:70:69#HisKA:290:0.00000000000000891:357:68:64#HATPase_c:404:3.81e-29:514:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002860405::NZ_NMWV01000005.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span111753-114268Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTam1G_0329RefSeq proteinWP_101625364.1
Context group ID
GCF_002860405::NZ_NMWV01000005.1::G00013Context members
Tam1G_RS01690Tam1G_RS01695
Partner locus tags
Tam1G_RS01690Tam1G_RS01695
Partner old locus tags
Tam1G_0328Tam1G_0329
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101625364.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX7S3L6Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX7S3L6_9BIFIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTam1G_RS01695Primary locus identifier stored in the genes table.
Old locus tagTam1G_0329Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMWV01000005.1Sequence record reported by the local genomic context database.
Genomic interval112 535-114 268 nt1 734 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span111 753-114 268 ntGCF_002860405::NZ_NMWV01000005.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002860405::NZ_NMWV01000005.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMWV01000005.1All displayed genes belong to this local TCS context.
Neighborhood span111 753-114 268 nt2 516 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
111 753 nt114 268 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Tam1G_RS01690GCF_002860405#Tam1G_RS01690
RROmpR
111 753-112 469 nt · Forward (+)
Tam1G_RS01695GCF_002860405#Tam1G_RS01695
HKClassicCurrent focus
112 535-114 268 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002860405#Tam1G_RS01695The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1178250
Simplified PFAM architecture for HKOC_1178250
PFAM domain coverage: 229 / 577 aa (39.7%)
1 aa577 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[228-279] | HisKA[291-357] | HATPase_c[404-513]
- Domain count: 3
- Matched identifier: HKOC_1178250
- Positioned domains: HAMP 228-279 ; HisKA 291-357 ; HATPase_c 404-513
Cluster members and taxonomy
Representative gene: GCF_002860405#Tam1G_RS01695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 020 965 · GCF_002860405
AssemblyASM286040v1 · Contighaploid
Genome composition2 639 899 bp · 56,0% GCBifidobacterium imperatoris
Signal transduction countsGenes 32 · HK 13 · RR 17CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key