1 HisKA#1
180-244 aa · 65 aa · 15.1% of protein
Raw token
HisKA:180:0.000000000161:244:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Tam1G_RS04785
Histidine kinase, Classic
Bifidobacterium imperatoris · GCF_002860405
ClassHKTypeClassicLength431 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002860405#Tam1G_RS04785Stable P2CS identifier used across views.
GenomeGCF_002860405Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length431 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 431 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa431 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
309-421 aa · 113 aa · 26.2% of protein
Raw token
HATPase_c:309:5.21e-31:421:113:109- Raw architecture: HisKA:180:0.000000000161:244:65:64#HATPase_c:309:5.21e-31:421:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002860405::NZ_NMWV01000011.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span132119-134332Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTam1G_0930RefSeq proteinWP_101625659.1
Context group ID
GCF_002860405::NZ_NMWV01000011.1::G00002Context members
Tam1G_RS04785Tam1G_RS04790
Partner locus tags
Tam1G_RS04785Tam1G_RS04790
Partner old locus tags
Tam1G_0930Tam1G_0931
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101625659.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5ISZ0Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5ISZ0_9BIFIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTam1G_RS04785Primary locus identifier stored in the genes table.
Old locus tagTam1G_0930Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMWV01000011.1Sequence record reported by the local genomic context database.
Genomic interval132 119-133 414 nt1 296 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span132 119-134 332 ntGCF_002860405::NZ_NMWV01000011.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002860405::NZ_NMWV01000011.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMWV01000011.1All displayed genes belong to this local TCS context.
Neighborhood span132 119-134 332 nt2 214 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
132 119 nt134 332 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Tam1G_RS04785GCF_002860405#Tam1G_RS04785
HKClassicCurrent focus
132 119-133 414 nt · Forward (+)
Tam1G_RS04790GCF_002860405#Tam1G_RS04790
RROmpR
133 628-134 332 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002860405#Tam1G_RS04785The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2163517
Simplified PFAM architecture for HKOC_2163517
PFAM domain coverage: 176 / 431 aa (40.8%)
1 aa431 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[180-244] | HATPase_c[310-420]
- Domain count: 2
- Matched identifier: HKOC_2163517
- Positioned domains: HisKA 180-244 ; HATPase_c 310-420
Cluster members and taxonomy
Representative gene: GCF_002860405#Tam1G_RS04785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 020 965 · GCF_002860405
AssemblyASM286040v1 · Contighaploid
Genome composition2 639 899 bp · 56,0% GCBifidobacterium imperatoris
Signal transduction countsGenes 32 · HK 13 · RR 17CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key