1 Response_reg#1
18-130 aa · 113 aa · 50.4% of protein
Raw token
Response_reg:18:0.00000000000214:130:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Tam1G_RS02610
Response regulator NarL family
Bifidobacterium imperatoris · GCF_002860405
ClassRRTypeNarLLength224 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002860405#Tam1G_RS02610Stable P2CS identifier used across views.
GenomeGCF_002860405Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 224 aa (74.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
163-216 aa · 54 aa · 24.1% of protein
Raw token
HTH_LUXR:163:0.0000000000000286:216:54:58- Raw architecture: Response_reg:18:0.00000000000214:130:114:111#HTH_LUXR:163:0.0000000000000286:216:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002860405::NZ_NMWV01000005.1::G00017
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span339066-339740Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTam1G_0507RefSeq proteinWP_165781871.1
Context group ID
GCF_002860405::NZ_NMWV01000005.1::G00017Context members
Tam1G_RS02610
Partner locus tags
Tam1G_RS02610
Partner old locus tags
Tam1G_0507
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_165781871.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5IUP2Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5IUP2_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTam1G_RS02610Primary locus identifier stored in the genes table.
Old locus tagTam1G_0507Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMWV01000005.1Sequence record reported by the local genomic context database.
Genomic interval339 066-339 740 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span339 066-339 740 ntGCF_002860405::NZ_NMWV01000005.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002860405::NZ_NMWV01000005.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMWV01000005.1All displayed genes belong to this local TCS context.
Neighborhood span339 066-339 740 nt675 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
339 066 nt339 740 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Tam1G_RS02610GCF_002860405#Tam1G_RS02610
RRNarLCurrent focus
339 066-339 740 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002860405#Tam1G_RS02610The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1541049
Simplified PFAM architecture for RROC_1541049
PFAM domain coverage: 159 / 224 aa (71.0%)
1 aa224 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[18-123] | GerE[163-215]
- Domain count: 2
- Matched identifier: RROC_1541049
- Positioned domains: Response_reg 18-123 ; Response_reg 18-123 ; GerE 163-215 ; GerE 163-215
Cluster members and taxonomy
Representative gene: GCF_002860405#Tam1G_RS02610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 020 965 · GCF_002860405
AssemblyASM286040v1 · Contighaploid
Genome composition2 639 899 bp · 56,0% GCBifidobacterium imperatoris
Signal transduction countsGenes 32 · HK 13 · RR 17CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key