1 HAMP#1
56-126 aa · 71 aa · 19.9% of protein
Raw token
HAMP:56:8.19e-19:126:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Tam1G_RS02235
Histidine kinase, Classic
Bifidobacterium imperatoris · GCF_002860405
ClassHKTypeClassicLength356 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002860405#Tam1G_RS02235Stable P2CS identifier used across views.
GenomeGCF_002860405Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length356 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 356 aa (69.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa356 aa
Domain-by-domain annotation3 items
2 HisKA#2
130-194 aa · 65 aa · 18.3% of protein
Raw token
HisKA:130:3.55e-16:194:65:643 HATPase_c#3
239-349 aa · 111 aa · 31.2% of protein
Raw token
HATPase_c:239:8.54e-22:349:112:109- Raw architecture: HAMP:56:8.19e-19:126:71:69#HisKA:130:3.55e-16:194:65:64#HATPase_c:239:8.54e-22:349:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002860405::NZ_NMWV01000005.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span250615-252407Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTam1G_0437RefSeq proteinWP_101625288.1
Context group ID
GCF_002860405::NZ_NMWV01000005.1::G00015Context members
Tam1G_RS02235Tam1G_RS02240
Partner locus tags
Tam1G_RS02235Tam1G_RS02240
Partner old locus tags
Tam1G_0437Tam1G_0438
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101625288.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5IUG5Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5IUG5_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTam1G_RS02235Primary locus identifier stored in the genes table.
Old locus tagTam1G_0437Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMWV01000005.1Sequence record reported by the local genomic context database.
Genomic interval250 615-251 685 nt1 071 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span250 615-252 407 ntGCF_002860405::NZ_NMWV01000005.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002860405::NZ_NMWV01000005.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMWV01000005.1All displayed genes belong to this local TCS context.
Neighborhood span250 615-252 407 nt1 793 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
250 615 nt252 407 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Tam1G_RS02235GCF_002860405#Tam1G_RS02235
HKClassicCurrent focus
250 615-251 685 nt · Reverse (-)
Tam1G_RS02240GCF_002860405#Tam1G_RS02240
RROmpR
251 685-252 407 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002860405#Tam1G_RS02235The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2771240
Simplified PFAM architecture for HKOC_2771240
PFAM domain coverage: 229 / 356 aa (64.3%)
1 aa356 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[73-125] | HisKA[131-194] | HATPase_c[239-350]
- Domain count: 3
- Matched identifier: HKOC_2771240
- Positioned domains: HAMP 73-125 ; HisKA 131-194 ; HATPase_c 239-350
Cluster members and taxonomy
Representative gene: GCF_002860405#Tam1G_RS02235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 020 965 · GCF_002860405
AssemblyASM286040v1 · Contighaploid
Genome composition2 639 899 bp · 56,0% GCBifidobacterium imperatoris
Signal transduction countsGenes 32 · HK 13 · RR 17CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key