1 Response_reg#1
20-131 aa · 112 aa · 47.9% of protein
Raw token
Response_reg:20:5.3e-30:131:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Tam1G_RS00245
Response regulator NarL family
Bifidobacterium imperatoris · GCF_002860405
ClassRRTypeNarLLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002860405#Tam1G_RS00245Stable P2CS identifier used across views.
GenomeGCF_002860405Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 234 aa (72.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
169-225 aa · 57 aa · 24.4% of protein
Raw token
HTH_LUXR:169:5.25e-17:225:58:58- Raw architecture: Response_reg:20:5.3e-30:131:112:111#HTH_LUXR:169:5.25e-17:225:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002860405::NZ_NMWV01000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span52109-52813Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTam1G_0049RefSeq proteinWP_101625020.1
Context group ID
GCF_002860405::NZ_NMWV01000001.1::G00001Context members
Tam1G_RS00245
Partner locus tags
Tam1G_RS00245
Partner old locus tags
Tam1G_0049
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101625020.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX7S1P3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX7S1P3_9BIFIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTam1G_RS00245Primary locus identifier stored in the genes table.
Old locus tagTam1G_0049Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMWV01000001.1Sequence record reported by the local genomic context database.
Genomic interval52 109-52 813 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span52 109-52 813 ntGCF_002860405::NZ_NMWV01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002860405::NZ_NMWV01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMWV01000001.1All displayed genes belong to this local TCS context.
Neighborhood span52 109-52 813 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 109 nt52 813 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Tam1G_RS00245GCF_002860405#Tam1G_RS00245
RRNarLCurrent focus
52 109-52 813 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002860405#Tam1G_RS00245The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma70_r4_22 domains in the representative PFAM annotation.
PFAM architecture for RROC_1054266
Simplified PFAM architecture for RROC_1054266
PFAM domain coverage: 165 / 234 aa (70.5%)
1 aa234 aa
Response_regSigma70_r4_2
- Simplified architecture: Response_reg + Sigma70_r4_2
- Raw architecture: Response_reg[18-131] | Sigma70_r4_2[163-213]
- Domain count: 2
- Matched identifier: RROC_1054266
- Positioned domains: Response_reg 18-131 ; Response_reg 18-131 ; Sigma70_r4_2 163-213 ; Sigma70_r4_2 163-213
Cluster members and taxonomy
Representative gene: GCF_002860405#Tam1G_RS00245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 020 965 · GCF_002860405
AssemblyASM286040v1 · Contighaploid
Genome composition2 639 899 bp · 56,0% GCBifidobacterium imperatoris
Signal transduction countsGenes 32 · HK 13 · RR 17CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key