1 HisKA#1
286-348 aa · 63 aa · 12.7% of protein
Raw token
HisKA:286:0.0000000000000125:348:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COL78_RS12930
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002569215
ClassHKTypeClassicLength498 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002569215#COL78_RS12930Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length498 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 498 aa (33.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa498 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
394-495 aa · 102 aa · 20.5% of protein
Raw token
HATPase_c:394:1.17e-28:495:105:109- Raw architecture: HisKA:286:0.0000000000000125:348:63:64#HATPase_c:394:1.17e-28:495:105:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002569215::NZ_NVGR01000014.1::G00011
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span274079-275575Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOL78_12940RefSeq proteinWP_098047505.1
Context group ID
GCF_002569215::NZ_NVGR01000014.1::G00011Context members
COL78_RS12930
Partner locus tags
COL78_RS12930
Partner old locus tags
COL78_12940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_098047505.1Primary protein accession used for annex mappings.
UniProt accessionA0A2C5NZW5Primary UniProt accession resolved in the annex database.
UniProt IDA0A2C5NZW5_9BACIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOL78_RS12930Primary locus identifier stored in the genes table.
Old locus tagCOL78_12940Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVGR01000014.1Sequence record reported by the local genomic context database.
Genomic interval274 079-275 575 nt1 497 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span274 079-275 575 ntGCF_002569215::NZ_NVGR01000014.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002569215::NZ_NVGR01000014.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVGR01000014.1All displayed genes belong to this local TCS context.
Neighborhood span274 079-275 575 nt1 497 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
274 079 nt275 575 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COL78_RS12930GCF_002569215#COL78_RS12930
HKClassicCurrent focus
274 079-275 575 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002554835#CN595_RS06955Use this link to inspect the representative gene detail.
PFAM architecturedCache_1 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1488080
Simplified PFAM architecture for HKOC_1488080
PFAM domain coverage: 336 / 498 aa (67.5%)
1 aa498 aa
dCache_1HisKAHATPase_c
- Simplified architecture: dCache_1 + HisKA + HATPase_c
- Raw architecture: dCache_1[37-207] | HisKA[286-346] | HATPase_c[393-496]
- Domain count: 3
- Matched identifier: HKOC_1488080
- Positioned domains: dCache_1 37-207 ; HisKA 286-346 ; HATPase_c 393-496
Cluster members and taxonomy
Representative gene: GCF_002554835#CN595_RS06955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002569215
AssemblyASM256921v1 · Scaffoldhaploid
Genome composition5 544 810 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 111 · HK 59 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key