1 HisKA#1
116-169 aa · 54 aa · 15.9% of protein
Raw token
HisKA:116:0.00000585:169:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COL78_RS03635
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002569215
ClassHKTypeClassicLength340 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002569215#COL78_RS03635Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length340 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 340 aa (47.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa340 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
216-323 aa · 108 aa · 31.8% of protein
Raw token
HATPase_c:216:2.44e-27:323:108:109- Raw architecture: HisKA:116:0.00000585:169:59:64#HATPase_c:216:2.44e-27:323:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002569215::NZ_NVGR01000005.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19916-21636Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOL78_03635RefSeq proteinWP_048541114.1
Context group ID
GCF_002569215::NZ_NVGR01000005.1::G00050Context members
COL78_RS03635COL78_RS03640
Partner locus tags
COL78_RS03635COL78_RS03640
Partner old locus tags
COL78_03635COL78_03640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_048541114.1Primary protein accession used for annex mappings.
UniProt accessionA0A0J7F469Primary UniProt accession resolved in the annex database.
UniProt IDA0A0J7F469_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOL78_RS03635Primary locus identifier stored in the genes table.
Old locus tagCOL78_03635Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVGR01000005.1Sequence record reported by the local genomic context database.
Genomic interval19 916-20 938 nt1 023 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 916-21 636 ntGCF_002569215::NZ_NVGR01000005.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002569215::NZ_NVGR01000005.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVGR01000005.1All displayed genes belong to this local TCS context.
Neighborhood span19 916-21 636 nt1 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 916 nt21 636 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COL78_RS03635GCF_002569215#COL78_RS03635
HKClassicCurrent focus
19 916-20 938 nt · Reverse (-)
COL78_RS03640GCF_002569215#COL78_RS03640
RROmpR
20 941-21 636 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001044745#TU65_RS01290Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2836792
Simplified PFAM architecture for HKOC_2836792
PFAM domain coverage: 108 / 340 aa (31.8%)
1 aa340 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[216-323]
- Domain count: 1
- Matched identifier: HKOC_2836792
- Positioned domains: HATPase_c 216-323
Cluster members and taxonomy
Representative gene: GCF_001044745#TU65_RS01290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002569215
AssemblyASM256921v1 · Scaffoldhaploid
Genome composition5 544 810 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 111 · HK 59 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key