1 HAMP#1
63-130 aa · 68 aa · 18.5% of protein
Raw token
HAMP:63:0.00000053:130:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COL78_RS03565
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002569215
ClassHKTypeClassicLength368 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002569215#COL78_RS03565Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length368 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 368 aa (67.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa368 aa
Domain-by-domain annotation3 items
2 HisKA#2
141-208 aa · 68 aa · 18.5% of protein
Raw token
HisKA:141:0.00000000000208:208:68:643 HATPase_c#3
253-364 aa · 112 aa · 30.4% of protein
Raw token
HATPase_c:253:6.85e-26:364:113:109- Raw architecture: HAMP:63:0.00000053:130:68:69#HisKA:141:0.00000000000208:208:68:64#HATPase_c:253:6.85e-26:364:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002569215::NZ_NVGR01000005.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2209-4006Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOL78_03565RefSeq proteinWP_098076079.1
Context group ID
GCF_002569215::NZ_NVGR01000005.1::G00049Context members
COL78_RS03560COL78_RS03565
Partner locus tags
COL78_RS03560COL78_RS03565
Partner old locus tags
COL78_03560COL78_03565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098076079.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOL78_RS03565Primary locus identifier stored in the genes table.
Old locus tagCOL78_03565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVGR01000005.1Sequence record reported by the local genomic context database.
Genomic interval2 900-4 006 nt1 107 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 209-4 006 ntGCF_002569215::NZ_NVGR01000005.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002569215::NZ_NVGR01000005.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVGR01000005.1All displayed genes belong to this local TCS context.
Neighborhood span2 209-4 006 nt1 798 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 209 nt4 006 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COL78_RS03560GCF_002569215#COL78_RS03560
RROmpR
2 209-2 907 nt · Forward (+)
COL78_RS03565GCF_002569215#COL78_RS03565
HKClassicCurrent focus
2 900-4 006 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002555665#CN621_RS02035Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2699338
Simplified PFAM architecture for HKOC_2699338
PFAM domain coverage: 223 / 368 aa (60.6%)
1 aa368 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[84-129] | HisKA[142-207] | HATPase_c[253-363]
- Domain count: 3
- Matched identifier: HKOC_2699338
- Positioned domains: HAMP 84-129 ; HisKA 142-207 ; HATPase_c 253-363
Cluster members and taxonomy
Representative gene: GCF_002555665#CN621_RS02035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002569215
AssemblyASM256921v1 · Scaffoldhaploid
Genome composition5 544 810 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 111 · HK 59 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key