1 Response_reg#1
4-113 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:4:8.65e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COL78_RS03640
Response regulator OmpR family
Bacillus wiedmannii · GCF_002569215
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002569215#COL78_RS03640Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 231 aa (80.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-225 aa · 75 aa · 32.5% of protein
Raw token
Trans_reg_C:151:8.61e-25:225:76:77- Raw architecture: Response_reg:4:8.65e-28:113:111:111#Trans_reg_C:151:8.61e-25:225:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002569215::NZ_NVGR01000005.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19916-21636Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOL78_03640RefSeq proteinWP_098076061.1
Context group ID
GCF_002569215::NZ_NVGR01000005.1::G00050Context members
COL78_RS03635COL78_RS03640
Partner locus tags
COL78_RS03635COL78_RS03640
Partner old locus tags
COL78_03635COL78_03640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098076061.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOL78_RS03640Primary locus identifier stored in the genes table.
Old locus tagCOL78_03640Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVGR01000005.1Sequence record reported by the local genomic context database.
Genomic interval20 941-21 636 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 916-21 636 ntGCF_002569215::NZ_NVGR01000005.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002569215::NZ_NVGR01000005.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVGR01000005.1All displayed genes belong to this local TCS context.
Neighborhood span19 916-21 636 nt1 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 916 nt21 636 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COL78_RS03635GCF_002569215#COL78_RS03635
HKClassic
19 916-20 938 nt · Reverse (-)
COL78_RS03640GCF_002569215#COL78_RS03640
RROmpRCurrent focus
20 941-21 636 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002555665#CN621_RS01960Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1166167
Simplified PFAM architecture for RROC_1166167
PFAM domain coverage: 184 / 231 aa (79.7%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-225]
- Domain count: 2
- Matched identifier: RROC_1166167
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-225 ; Trans_reg_C 151-225
Cluster members and taxonomy
Representative gene: GCF_002555665#CN621_RS01960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002569215
AssemblyASM256921v1 · Scaffoldhaploid
Genome composition5 544 810 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 111 · HK 59 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key