1 Response_reg#1
3-93 aa · 91 aa · 37.3% of protein
Raw token
Response_reg:3:0.0000058:93:91:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COL78_RS10365
Response regulator LytTR family
Bacillus wiedmannii · GCF_002569215
ClassRRTypeLytTRLength244 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002569215#COL78_RS10365Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 244 aa (75.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 LytTR#2
150-241 aa · 92 aa · 37.7% of protein
Raw token
LytTR:150:9.43e-22:241:97:98- Raw architecture: Response_reg:3:0.0000058:93:91:111#LytTR:150:9.43e-22:241:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002569215::NZ_NVGR01000012.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span41778-42512Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOL78_10375RefSeq proteinWP_048547658.1
Context group ID
GCF_002569215::NZ_NVGR01000012.1::G00006Context members
COL78_RS10365
Partner locus tags
COL78_RS10365
Partner old locus tags
COL78_10375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_048547658.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOL78_RS10365Primary locus identifier stored in the genes table.
Old locus tagCOL78_10375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVGR01000012.1Sequence record reported by the local genomic context database.
Genomic interval41 778-42 512 nt735 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span41 778-42 512 ntGCF_002569215::NZ_NVGR01000012.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002569215::NZ_NVGR01000012.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVGR01000012.1All displayed genes belong to this local TCS context.
Neighborhood span41 778-42 512 nt735 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 778 nt42 512 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COL78_RS10365GCF_002569215#COL78_RS10365
RRLytTRCurrent focus
41 778-42 512 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001044745#TU65_RS27385Use this link to inspect the representative gene detail.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0807823
Simplified PFAM architecture for RROC_0807823
PFAM domain coverage: 91 / 244 aa (37.3%)
1 aa244 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[150-240]
- Domain count: 1
- Matched identifier: RROC_0807823
- Positioned domains: LytTR 150-240 ; LytTR 150-240
Cluster members and taxonomy
Representative gene: GCF_001044745#TU65_RS27385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002569215
AssemblyASM256921v1 · Scaffoldhaploid
Genome composition5 544 810 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 111 · HK 59 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key