1 Response_reg#1
3-123 aa · 121 aa · 31.8% of protein
Raw token
Response_reg:3:3.91e-31:123:121:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COL78_RS08765
Response regulator, RsbU family
Bacillus wiedmannii · GCF_002569215
ClassRRTypeRsbULength380 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002569215#COL78_RS08765Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regSpoIIE
Protein length380 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage309 / 380 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 SpoIIESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa380 aa
Domain-by-domain annotation2 items
2 SpoIIE#2
190-377 aa · 188 aa · 49.5% of protein
Raw token
SpoIIE:190:1.11e-45:377:194:190- Raw architecture: Response_reg:3:3.91e-31:123:121:111#SpoIIE:190:1.11e-45:377:194:190
- Domain description: 1 Response_reg,1 SpoIIE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002569215::NZ_NVGR01000011.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span55763-56905Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOL78_08775RefSeq proteinWP_098048996.1
Context group ID
GCF_002569215::NZ_NVGR01000011.1::G00004Context members
COL78_RS08765
Partner locus tags
COL78_RS08765
Partner old locus tags
COL78_08775
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098048996.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOL78_RS08765Primary locus identifier stored in the genes table.
Old locus tagCOL78_08775Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVGR01000011.1Sequence record reported by the local genomic context database.
Genomic interval55 763-56 905 nt1 143 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span55 763-56 905 ntGCF_002569215::NZ_NVGR01000011.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002569215::NZ_NVGR01000011.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVGR01000011.1All displayed genes belong to this local TCS context.
Neighborhood span55 763-56 905 nt1 143 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
55 763 nt56 905 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COL78_RS08765GCF_002569215#COL78_RS08765
RRRsbUCurrent focus
55 763-56 905 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002556405#CN888_RS22735Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + SpoIIE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0422731
Simplified PFAM architecture for RROC_0422731
PFAM domain coverage: 308 / 380 aa (81.1%)
1 aa380 aa
Response_regSpoIIE
- Simplified architecture: Response_reg + SpoIIE
- Raw architecture: Response_reg[3-122] | SpoIIE[190-377]
- Domain count: 2
- Matched identifier: RROC_0422731
- Positioned domains: Response_reg 3-122 ; Response_reg 3-122 ; SpoIIE 190-377 ; SpoIIE 190-377
Cluster members and taxonomy
Representative gene: GCF_002556405#CN888_RS22735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002569215
AssemblyASM256921v1 · Scaffoldhaploid
Genome composition5 544 810 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 111 · HK 59 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key