1 HisKA_3#1
199-266 aa · 68 aa · 16.8% of protein
Raw token
HisKA_3:199:6.93e-17:266:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COL78_RS08705
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002569215
ClassHKTypeClassicLength405 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002569215#COL78_RS08705Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length405 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 405 aa (38.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa405 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
309-395 aa · 87 aa · 21.5% of protein
Raw token
HATPase_c:309:0.0000000000000741:395:100:109- Raw architecture: HisKA_3:199:6.93e-17:266:68:68#HATPase_c:309:0.0000000000000741:395:100:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002569215::NZ_NVGR01000011.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44790-46641Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOL78_08715RefSeq proteinWP_098079748.1
Context group ID
GCF_002569215::NZ_NVGR01000011.1::G00002Context members
COL78_RS08700COL78_RS08705
Partner locus tags
COL78_RS08700COL78_RS08705
Partner old locus tags
COL78_08710COL78_08715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098079748.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOL78_RS08705Primary locus identifier stored in the genes table.
Old locus tagCOL78_08715Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVGR01000011.1Sequence record reported by the local genomic context database.
Genomic interval45 424-46 641 nt1 218 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span44 790-46 641 ntGCF_002569215::NZ_NVGR01000011.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002569215::NZ_NVGR01000011.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVGR01000011.1All displayed genes belong to this local TCS context.
Neighborhood span44 790-46 641 nt1 852 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 790 nt46 641 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COL78_RS08700GCF_002569215#COL78_RS08700
RRNarL
44 790-45 434 nt · Reverse (-)
COL78_RS08705GCF_002569215#COL78_RS08705
HKClassicCurrent focus
45 424-46 641 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002555665#CN621_RS22515Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2398934
Simplified PFAM architecture for HKOC_2398934
PFAM domain coverage: 157 / 405 aa (38.8%)
1 aa405 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[199-265] | HATPase_c[307-396]
- Domain count: 2
- Matched identifier: HKOC_2398934
- Positioned domains: HisKA_3 199-265 ; HATPase_c 307-396
Cluster members and taxonomy
Representative gene: GCF_002555665#CN621_RS22515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002569215
AssemblyASM256921v1 · Scaffoldhaploid
Genome composition5 544 810 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 111 · HK 59 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key