1 HAMP#1
165-232 aa · 68 aa · 14.8% of protein
Raw token
HAMP:165:0.00000000000000117:232:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COL78_RS06440
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002569215
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002569215#COL78_RS06440Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage227 / 458 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
244-303 aa · 60 aa · 13.1% of protein
Raw token
HisKA:244:0.00000000000291:303:61:643 HATPase_c#3
349-447 aa · 99 aa · 21.6% of protein
Raw token
HATPase_c:349:4.44e-18:447:102:109- Raw architecture: HAMP:165:0.00000000000000117:232:68:69#HisKA:244:0.00000000000291:303:61:64#HATPase_c:349:4.44e-18:447:102:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002569215::NZ_NVGR01000006.1::G00063
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span419657-421673Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOL78_06450RefSeq proteinWP_098122080.1
Context group ID
GCF_002569215::NZ_NVGR01000006.1::G00063Context members
COL78_RS06440COL78_RS06445
Partner locus tags
COL78_RS06440COL78_RS06445
Partner old locus tags
COL78_06450COL78_06455
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098122080.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOL78_RS06440Primary locus identifier stored in the genes table.
Old locus tagCOL78_06450Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVGR01000006.1Sequence record reported by the local genomic context database.
Genomic interval419 657-421 033 nt1 377 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span419 657-421 673 ntGCF_002569215::NZ_NVGR01000006.1::G00063
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002569215::NZ_NVGR01000006.1::G00063Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVGR01000006.1All displayed genes belong to this local TCS context.
Neighborhood span419 657-421 673 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
419 657 nt421 673 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COL78_RS06440GCF_002569215#COL78_RS06440
HKClassicCurrent focus
419 657-421 033 nt · Reverse (-)
COL78_RS06445GCF_002569215#COL78_RS06445
RROmpR
421 026-421 673 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002555885#CN646_RS28120Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1861592
Simplified PFAM architecture for HKOC_1861592
PFAM domain coverage: 205 / 458 aa (44.8%)
1 aa458 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[182-232] | HisKA[245-303] | HATPase_c[350-444]
- Domain count: 3
- Matched identifier: HKOC_1861592
- Positioned domains: HAMP 182-232 ; HisKA 245-303 ; HATPase_c 350-444
Cluster members and taxonomy
Representative gene: GCF_002555885#CN646_RS28120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002569215
AssemblyASM256921v1 · Scaffoldhaploid
Genome composition5 544 810 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 111 · HK 59 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key