1 HisKA#1
205-269 aa · 65 aa · 15.4% of protein
Raw token
HisKA:205:2.35e-16:269:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COL78_RS05325
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002569215
ClassHKTypeClassicLength422 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002569215#COL78_RS05325Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length422 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 422 aa (40.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa422 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
309-412 aa · 104 aa · 24.6% of protein
Raw token
HATPase_c:309:2.67e-23:412:107:109- Raw architecture: HisKA:205:2.35e-16:269:65:64#HATPase_c:309:2.67e-23:412:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002569215::NZ_NVGR01000006.1::G00060
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span224505-225773Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOL78_05335RefSeq proteinWP_098077343.1
Context group ID
GCF_002569215::NZ_NVGR01000006.1::G00060Context members
COL78_RS05325
Partner locus tags
COL78_RS05325
Partner old locus tags
COL78_05335
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098077343.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOL78_RS05325Primary locus identifier stored in the genes table.
Old locus tagCOL78_05335Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVGR01000006.1Sequence record reported by the local genomic context database.
Genomic interval224 505-225 773 nt1 269 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span224 505-225 773 ntGCF_002569215::NZ_NVGR01000006.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002569215::NZ_NVGR01000006.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVGR01000006.1All displayed genes belong to this local TCS context.
Neighborhood span224 505-225 773 nt1 269 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
224 505 nt225 773 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COL78_RS05325GCF_002569215#COL78_RS05325
HKClassicCurrent focus
224 505-225 773 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002555665#CN621_RS08440Use this link to inspect the representative gene detail.
PFAM architecture5TM-5TMR_LYT + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2247448
Simplified PFAM architecture for HKOC_2247448
PFAM domain coverage: 322 / 422 aa (76.3%)
1 aa422 aa
5TM-5TMR_LYTHisKAHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + HisKA + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[22-176] | HisKA[205-267] | HATPase_c[310-413]
- Domain count: 3
- Matched identifier: HKOC_2247448
- Positioned domains: 5TM-5TMR_LYT 22-176 ; HisKA 205-267 ; HATPase_c 310-413
Cluster members and taxonomy
Representative gene: GCF_002555665#CN621_RS08440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002569215
AssemblyASM256921v1 · Scaffoldhaploid
Genome composition5 544 810 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 111 · HK 59 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key