1 HAMP#1
205-269 aa · 65 aa · 12.9% of protein
Raw token
HAMP:205:0.00000000692:269:65:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COL78_RS03690
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002569215
ClassHKTypeClassicLength502 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002569215#COL78_RS03690Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length502 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 502 aa (48.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa502 aa
Domain-by-domain annotation3 items
2 HisKA#2
280-347 aa · 68 aa · 13.5% of protein
Raw token
HisKA:280:0.0000000000000111:347:68:643 HATPase_c#3
394-502 aa · 109 aa · 21.7% of protein
Raw token
HATPase_c:394:1.28e-20:502:110:109- Raw architecture: HAMP:205:0.00000000692:269:65:69#HisKA:280:0.0000000000000111:347:68:64#HATPase_c:394:1.28e-20:502:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002569215::NZ_NVGR01000005.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span28735-30928Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOL78_03690RefSeq proteinWP_098642332.1
Context group ID
GCF_002569215::NZ_NVGR01000005.1::G00051Context members
COL78_RS03685COL78_RS03690
Partner locus tags
COL78_RS03685COL78_RS03690
Partner old locus tags
COL78_03685COL78_03690
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098642332.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOL78_RS03690Primary locus identifier stored in the genes table.
Old locus tagCOL78_03690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVGR01000005.1Sequence record reported by the local genomic context database.
Genomic interval29 420-30 928 nt1 509 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span28 735-30 928 ntGCF_002569215::NZ_NVGR01000005.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002569215::NZ_NVGR01000005.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVGR01000005.1All displayed genes belong to this local TCS context.
Neighborhood span28 735-30 928 nt2 194 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 735 nt30 928 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COL78_RS03685GCF_002569215#COL78_RS03685
RROmpR
28 735-29 436 nt · Forward (+)
COL78_RS03690GCF_002569215#COL78_RS03690
HKClassicCurrent focus
29 420-30 928 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002569215#COL78_RS03690The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1464677
Simplified PFAM architecture for HKOC_1464677
PFAM domain coverage: 219 / 502 aa (43.6%)
1 aa502 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[225-268] | HisKA[280-346] | HATPase_c[394-501]
- Domain count: 3
- Matched identifier: HKOC_1464677
- Positioned domains: HAMP 225-268 ; HisKA 280-346 ; HATPase_c 394-501
Cluster members and taxonomy
Representative gene: GCF_002569215#COL78_RS03690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002569215
AssemblyASM256921v1 · Scaffoldhaploid
Genome composition5 544 810 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 111 · HK 59 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key