1 HAMP#1
101-166 aa · 66 aa · 16.8% of protein
Raw token
HAMP:101:0.0000000000193:166:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CHR61_RS07975
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_002550045
ClassHKTypeClassicLength392 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550045#CHR61_RS07975Stable P2CS identifier used across views.
GenomeGCF_002550045Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length392 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage233 / 392 aa (59.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa392 aa
Domain-by-domain annotation3 items
2 HisKA#2
177-240 aa · 64 aa · 16.3% of protein
Raw token
HisKA:177:0.0000000000177:240:64:643 HATPase_c#3
286-388 aa · 103 aa · 26.3% of protein
Raw token
HATPase_c:286:1.32e-21:388:105:109- Raw architecture: HAMP:101:0.0000000000193:166:68:69#HisKA:177:0.0000000000177:240:64:64#HATPase_c:286:1.32e-21:388:105:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550045::NZ_NOUW01000021.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12761-14601Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCHR61_07950RefSeq proteinWP_097770951.1
Context group ID
GCF_002550045::NZ_NOUW01000021.1::G00009Context members
CHR61_RS07970CHR61_RS07975
Partner locus tags
CHR61_RS07970CHR61_RS07975
Partner old locus tags
CHR61_07945CHR61_07950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097770951.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7BCX2Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7BCX2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCHR61_RS07975Primary locus identifier stored in the genes table.
Old locus tagCHR61_07950Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NOUW01000021.1Sequence record reported by the local genomic context database.
Genomic interval13 423-14 601 nt1 179 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 761-14 601 ntGCF_002550045::NZ_NOUW01000021.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550045::NZ_NOUW01000021.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NOUW01000021.1All displayed genes belong to this local TCS context.
Neighborhood span12 761-14 601 nt1 841 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 761 nt14 601 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CHR61_RS07970GCF_002550045#CHR61_RS07970
RROmpR
12 761-13 435 nt · Forward (+)
CHR61_RS07975GCF_002550045#CHR61_RS07975
HKClassicCurrent focus
13 423-14 601 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550045#CHR61_RS07975The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2512507
Simplified PFAM architecture for HKOC_2512507
PFAM domain coverage: 217 / 392 aa (55.4%)
1 aa392 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[115-165] | HisKA[178-240] | HATPase_c[286-388]
- Domain count: 3
- Matched identifier: HKOC_2512507
- Positioned domains: HAMP 115-165 ; HisKA 178-240 ; HATPase_c 286-388
Cluster members and taxonomy
Representative gene: GCF_002550045#CHR61_RS07975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002550045
AssemblyASM255004v1 · Contighaploid
Genome composition2 879 169 bp · 57,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 46 · HK 21 · RR 24CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key