1 HAMP#1
159-225 aa · 67 aa · 14.8% of protein
Raw token
HAMP:159:0.00000818:225:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CHR61_RS04375
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_002550045
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550045#CHR61_RS04375Stable P2CS identifier used across views.
GenomeGCF_002550045Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 454 aa (52.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation3 items
2 HisKA#2
236-302 aa · 67 aa · 14.8% of protein
Raw token
HisKA:236:0.00000000000176:302:67:643 HATPase_c#3
351-453 aa · 103 aa · 22.7% of protein
Raw token
HATPase_c:351:9.42e-18:453:107:109- Raw architecture: HAMP:159:0.00000818:225:69:69#HisKA:236:0.00000000000176:302:67:64#HATPase_c:351:9.42e-18:453:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550045::NZ_NOUW01000014.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span224371-226451Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCHR61_04350RefSeq proteinWP_097770397.1
Context group ID
GCF_002550045::NZ_NOUW01000014.1::G00002Context members
CHR61_RS04375CHR61_RS04380
Partner locus tags
CHR61_RS04375CHR61_RS04380
Partner old locus tags
CHR61_04350CHR61_04355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097770397.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7BFM5Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7BFM5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCHR61_RS04375Primary locus identifier stored in the genes table.
Old locus tagCHR61_04350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NOUW01000014.1Sequence record reported by the local genomic context database.
Genomic interval224 371-225 735 nt1 365 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span224 371-226 451 ntGCF_002550045::NZ_NOUW01000014.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550045::NZ_NOUW01000014.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NOUW01000014.1All displayed genes belong to this local TCS context.
Neighborhood span224 371-226 451 nt2 081 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
224 371 nt226 451 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CHR61_RS04375GCF_002550045#CHR61_RS04375
HKClassicCurrent focus
224 371-225 735 nt · Reverse (-)
CHR61_RS04380GCF_002550045#CHR61_RS04380
RROmpR
225 732-226 451 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550045#CHR61_RS04375The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1914429
Simplified PFAM architecture for HKOC_1914429
PFAM domain coverage: 170 / 454 aa (37.4%)
1 aa454 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[236-302] | HATPase_c[351-453]
- Domain count: 2
- Matched identifier: HKOC_1914429
- Positioned domains: HisKA 236-302 ; HATPase_c 351-453
Cluster members and taxonomy
Representative gene: GCF_002550045#CHR61_RS04375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002550045
AssemblyASM255004v1 · Contighaploid
Genome composition2 879 169 bp · 57,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 46 · HK 21 · RR 24CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key