1 Response_reg#1
5-117 aa · 113 aa · 41.7% of protein
Raw token
Response_reg:5:1.24e-24:117:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS59_RS08680
Response regulator, unclassified
Faecalibacterium prausnitzii · GCF_002550015
ClassRRTypeunclassifiedLength271 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550015#CGS59_RS08680Stable P2CS identifier used across views.
GenomeGCF_002550015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length271 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage180 / 271 aa (66.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa271 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
169-203 aa · 35 aa · 12.9% of protein
Raw token
HTH_AraC:169:0.00000346:203:35:423 HTH_AraC#3
229-260 aa · 32 aa · 11.8% of protein
Raw token
HTH_AraC:229:0.0000000000518:260:32:42- Raw architecture: Response_reg:5:1.24e-24:117:117:111#HTH_AraC:169:0.00000346:203:35:42#HTH_AraC:229:0.0000000000518:260:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550015::NZ_NMTZ01000020.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span83769-86110Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS59_08655RefSeq proteinWP_097779643.1
Context group ID
GCF_002550015::NZ_NMTZ01000020.1::G00021Context members
CGS59_RS08675CGS59_RS08680
Partner locus tags
CGS59_RS08675CGS59_RS08680
Partner old locus tags
CGS59_08650CGS59_08655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097779643.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7AX67Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7AX67_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS59_RS08680Primary locus identifier stored in the genes table.
Old locus tagCGS59_08655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTZ01000020.1Sequence record reported by the local genomic context database.
Genomic interval85 295-86 110 nt816 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span83 769-86 110 ntGCF_002550015::NZ_NMTZ01000020.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550015::NZ_NMTZ01000020.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTZ01000020.1All displayed genes belong to this local TCS context.
Neighborhood span83 769-86 110 nt2 342 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 769 nt86 110 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CGS59_RS08675GCF_002550015#CGS59_RS08675
HKClassic
83 769-85 298 nt · Forward (+)
CGS59_RS08680GCF_002550015#CGS59_RS08680
RRunclassifiedCurrent focus
85 295-86 110 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550015#CGS59_RS08680The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0612414
Simplified PFAM architecture for RROC_0612414
PFAM domain coverage: 190 / 271 aa (70.1%)
1 aa271 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[183-260]
- Domain count: 2
- Matched identifier: RROC_0612414
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; HTH_18 183-260 ; HTH_18 183-260
Cluster members and taxonomy
Representative gene: GCF_002550015#CGS59_RS08680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002550015
AssemblyASM255001v1 · Scaffoldhaploid
Genome composition2 915 240 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 49 · HK 23 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key