1 Response_reg#1
4-108 aa · 105 aa · 44.5% of protein
Raw token
Response_reg:4:6.96e-17:108:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS59_RS00805
Response regulator LytTR family
Faecalibacterium prausnitzii · GCF_002550015
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002550015#CGS59_RS00805Stable P2CS identifier used across views.
GenomeGCF_002550015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage192 / 236 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-224 aa · 87 aa · 36.9% of protein
Raw token
LytTR:138:2.67e-20:224:93:98- Raw architecture: Response_reg:4:6.96e-17:108:109:111#LytTR:138:2.67e-20:224:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002550015::NZ_NMTZ01000002.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span163752-164462Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS59_00805RefSeq proteinWP_097778523.1
Context group ID
GCF_002550015::NZ_NMTZ01000002.1::G00007Context members
CGS59_RS00805
Partner locus tags
CGS59_RS00805
Partner old locus tags
CGS59_00805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097778523.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7B1A9Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7B1A9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS59_RS00805Primary locus identifier stored in the genes table.
Old locus tagCGS59_00805Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTZ01000002.1Sequence record reported by the local genomic context database.
Genomic interval163 752-164 462 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span163 752-164 462 ntGCF_002550015::NZ_NMTZ01000002.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550015::NZ_NMTZ01000002.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTZ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span163 752-164 462 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
163 752 nt164 462 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CGS59_RS00805GCF_002550015#CGS59_RS00805
RRLytTRCurrent focus
163 752-164 462 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550015#CGS59_RS00805The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0994053
Simplified PFAM architecture for RROC_0994053
PFAM domain coverage: 197 / 236 aa (83.5%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-114] | LytTR[140-225]
- Domain count: 2
- Matched identifier: RROC_0994053
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; LytTR 140-225 ; LytTR 140-225
Cluster members and taxonomy
Representative gene: GCF_002550015#CGS59_RS00805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002550015
AssemblyASM255001v1 · Scaffoldhaploid
Genome composition2 915 240 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 49 · HK 23 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key