1 Response_reg#1
7-121 aa · 115 aa · 47.1% of protein
Raw token
Response_reg:7:1.1e-17:121:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS59_RS00270
Response regulator LytTR family
Faecalibacterium prausnitzii · GCF_002550015
ClassRRTypeLytTRLength244 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002550015#CGS59_RS00270Stable P2CS identifier used across views.
GenomeGCF_002550015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage208 / 244 aa (85.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-231 aa · 93 aa · 38.1% of protein
Raw token
LytTR:139:0.00000000000125:231:98:98- Raw architecture: Response_reg:7:1.1e-17:121:117:111#LytTR:139:0.00000000000125:231:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002550015::NZ_NMTZ01000002.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span41527-42261Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS59_00270RefSeq proteinWP_055185548.1
Context group ID
GCF_002550015::NZ_NMTZ01000002.1::G00004Context members
CGS59_RS00270
Partner locus tags
CGS59_RS00270
Partner old locus tags
CGS59_00270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055185548.1Primary protein accession used for annex mappings.
UniProt accessionA0A173SAJ7Primary UniProt accession resolved in the annex database.
UniProt IDA0A173SAJ7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS59_RS00270Primary locus identifier stored in the genes table.
Old locus tagCGS59_00270Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTZ01000002.1Sequence record reported by the local genomic context database.
Genomic interval41 527-42 261 nt735 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 527-42 261 ntGCF_002550015::NZ_NMTZ01000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550015::NZ_NMTZ01000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTZ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span41 527-42 261 nt735 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 527 nt42 261 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CGS59_RS00270GCF_002550015#CGS59_RS00270
RRLytTRCurrent focus
41 527-42 261 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406255#AYV37_RS04530Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0808034
Simplified PFAM architecture for RROC_0808034
PFAM domain coverage: 197 / 244 aa (80.7%)
1 aa244 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-112] | LytTR[141-229]
- Domain count: 2
- Matched identifier: RROC_0808034
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; LytTR 141-229 ; LytTR 141-229
Cluster members and taxonomy
Representative gene: GCF_001406255#AYV37_RS04530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002550015
AssemblyASM255001v1 · Scaffoldhaploid
Genome composition2 915 240 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 49 · HK 23 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key