1 Response_reg#1
6-115 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:6:2.4e-22:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS55_RS12235
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_002549935
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002549935#CGS55_RS12235Stable P2CS identifier used across views.
GenomeGCF_002549935Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 223 aa (83.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 34.1% of protein
Raw token
Trans_reg_C:148:5.07e-22:223:77:77- Raw architecture: Response_reg:6:2.4e-22:115:111:111#Trans_reg_C:148:5.07e-22:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002549935::NZ_NMTV01000066.1::G00021
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span25795-26466Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS55_12210RefSeq proteinWP_097783681.1
Context group ID
GCF_002549935::NZ_NMTV01000066.1::G00021Context members
CGS55_RS12235
Partner locus tags
CGS55_RS12235
Partner old locus tags
CGS55_12210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097783681.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A6ZXT9Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A6ZXT9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS55_RS12235Primary locus identifier stored in the genes table.
Old locus tagCGS55_12210Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTV01000066.1Sequence record reported by the local genomic context database.
Genomic interval25 795-26 466 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span25 795-26 466 ntGCF_002549935::NZ_NMTV01000066.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002549935::NZ_NMTV01000066.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTV01000066.1All displayed genes belong to this local TCS context.
Neighborhood span25 795-26 466 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 795 nt26 466 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CGS55_RS12235GCF_002549935#CGS55_RS12235
RROmpRCurrent focus
25 795-26 466 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002549935#CGS55_RS12235The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1597403
Simplified PFAM architecture for RROC_1597403
PFAM domain coverage: 185 / 223 aa (83.0%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1597403
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_002549935#CGS55_RS12235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002549935
AssemblyASM254993v1 · Scaffoldhaploid
Genome composition3 422 520 bp · 55,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 64 · HK 30 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key