1 Response_reg#1
57-112 aa · 56 aa · 43.4% of protein
Raw token
Response_reg:57:0.00000000159:112:59:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS55_RS00460
Response regulator, CheY family
Faecalibacterium prausnitzii · GCF_002549935
ClassRRTypeCheYLength129 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002549935#CGS55_RS00460Stable P2CS identifier used across views.
GenomeGCF_002549935Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length129 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage56 / 129 aa (43.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa129 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:57:0.00000000159:112:59:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002549935::NZ_NMTV01000009.1::G00035
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span54753-55142Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS55_00455RefSeq proteinWP_242963082.1
Context group ID
GCF_002549935::NZ_NMTV01000009.1::G00035Context members
CGS55_RS00460
Partner locus tags
CGS55_RS00460
Partner old locus tags
CGS55_00455
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242963082.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS55_RS00460Primary locus identifier stored in the genes table.
Old locus tagCGS55_00455Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTV01000009.1Sequence record reported by the local genomic context database.
Genomic interval54 753-55 142 nt390 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span54 753-55 142 ntGCF_002549935::NZ_NMTV01000009.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002549935::NZ_NMTV01000009.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTV01000009.1All displayed genes belong to this local TCS context.
Neighborhood span54 753-55 142 nt390 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 753 nt55 142 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CGS55_RS00460GCF_002549935#CGS55_RS00460
RRCheYCurrent focus
54 753-55 142 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002549935#CGS55_RS00460The current gene is the representative for this cluster.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_2331741
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_002549935#CGS55_RS00460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002549935
AssemblyASM254993v1 · Scaffoldhaploid
Genome composition3 422 520 bp · 55,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 64 · HK 30 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key