1 Response_reg#1
3-112 aa · 110 aa · 45.8% of protein
Raw token
Response_reg:3:7.38e-16:112:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS55_RS00465
Response regulator LytTR family
Faecalibacterium prausnitzii · GCF_002549935
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002549935#CGS55_RS00465Stable P2CS identifier used across views.
GenomeGCF_002549935Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage202 / 240 aa (84.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-230 aa · 92 aa · 38.3% of protein
Raw token
LytTR:139:0.000000117:230:97:98- Raw architecture: Response_reg:3:7.38e-16:112:112:111#LytTR:139:0.000000117:230:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002549935::NZ_NMTV01000009.1::G00036
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span55354-56076Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS55_00460RefSeq proteinWP_097782342.1
Context group ID
GCF_002549935::NZ_NMTV01000009.1::G00036Context members
CGS55_RS00465
Partner locus tags
CGS55_RS00465
Partner old locus tags
CGS55_00460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097782342.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7A3Y6Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7A3Y6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS55_RS00465Primary locus identifier stored in the genes table.
Old locus tagCGS55_00460Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTV01000009.1Sequence record reported by the local genomic context database.
Genomic interval55 354-56 076 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span55 354-56 076 ntGCF_002549935::NZ_NMTV01000009.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002549935::NZ_NMTV01000009.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTV01000009.1All displayed genes belong to this local TCS context.
Neighborhood span55 354-56 076 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
55 354 nt56 076 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CGS55_RS00465GCF_002549935#CGS55_RS00465
RRLytTRCurrent focus
55 354-56 076 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002549935#CGS55_RS00465The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0886961
Simplified PFAM architecture for RROC_0886961
PFAM domain coverage: 201 / 240 aa (83.8%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-113] | LytTR[140-229]
- Domain count: 2
- Matched identifier: RROC_0886961
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; LytTR 140-229 ; LytTR 140-229
Cluster members and taxonomy
Representative gene: GCF_002549935#CGS55_RS00465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002549935
AssemblyASM254993v1 · Scaffoldhaploid
Genome composition3 422 520 bp · 55,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 64 · HK 30 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key