1 Response_reg#1
3-113 aa · 111 aa · 39.5% of protein
Raw token
Response_reg:3:6.97e-22:113:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS55_RS10775
Response regulator, unclassified
Faecalibacterium prausnitzii · GCF_002549935
ClassRRTypeunclassifiedLength281 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002549935#CGS55_RS10775Stable P2CS identifier used across views.
GenomeGCF_002549935Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length281 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 281 aa (39.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa281 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:6.97e-22:113:117:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002549935::NZ_NMTV01000063.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span22171-23016Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS55_10750RefSeq proteinWP_005922055.1
Context group ID
GCF_002549935::NZ_NMTV01000063.1::G00012Context members
CGS55_RS10775
Partner locus tags
CGS55_RS10775
Partner old locus tags
CGS55_10750
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005922055.1Primary protein accession used for annex mappings.
UniProt accessionA8S7X1Primary UniProt accession resolved in the annex database.
UniProt IDA8S7X1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS55_RS10775Primary locus identifier stored in the genes table.
Old locus tagCGS55_10750Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTV01000063.1Sequence record reported by the local genomic context database.
Genomic interval22 171-23 016 nt846 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span22 171-23 016 ntGCF_002549935::NZ_NMTV01000063.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002549935::NZ_NMTV01000063.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTV01000063.1All displayed genes belong to this local TCS context.
Neighborhood span22 171-23 016 nt846 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 171 nt23 016 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CGS55_RS10775GCF_002549935#CGS55_RS10775
RRunclassifiedCurrent focus
22 171-23 016 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154385#FAEPRAM212_RS04115Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0595501
Simplified PFAM architecture for RROC_0595501
PFAM domain coverage: 110 / 281 aa (39.1%)
1 aa281 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-112]
- Domain count: 1
- Matched identifier: RROC_0595501
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112
Cluster members and taxonomy
Representative gene: GCF_000154385#FAEPRAM212_RS04115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002549935
AssemblyASM254993v1 · Scaffoldhaploid
Genome composition3 422 520 bp · 55,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 64 · HK 30 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key