1 Response_reg#1
3-113 aa · 111 aa · 39.5% of protein
Raw token
Response_reg:3:6.97e-22:113:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FAEPRAM212_RS04115
Response regulator, unclassified
Faecalibacterium prausnitzii M21/2 · GCF_000154385
ClassRRTypeunclassifiedLength281 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154385#FAEPRAM212_RS04115Stable P2CS identifier used across views.
GenomeGCF_000154385Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length281 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 281 aa (39.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa281 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:6.97e-22:113:117:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154385::NZ_DS483494.1::G00022
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span26617-27462Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFAEPRAM212_00580RefSeq proteinWP_005922055.1
Context group ID
GCF_000154385::NZ_DS483494.1::G00022Context members
FAEPRAM212_RS04115
Partner locus tags
FAEPRAM212_RS04115
Partner old locus tags
FAEPRAM212_00580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005922055.1Primary protein accession used for annex mappings.
UniProt accessionA8S7X1Primary UniProt accession resolved in the annex database.
UniProt IDA8S7X1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFAEPRAM212_RS04115Primary locus identifier stored in the genes table.
Old locus tagFAEPRAM212_00580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483494.1Sequence record reported by the local genomic context database.
Genomic interval26 617-27 462 nt846 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span26 617-27 462 ntGCF_000154385::NZ_DS483494.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154385::NZ_DS483494.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483494.1All displayed genes belong to this local TCS context.
Neighborhood span26 617-27 462 nt846 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 617 nt27 462 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FAEPRAM212_RS04115GCF_000154385#FAEPRAM212_RS04115
RRunclassifiedCurrent focus
26 617-27 462 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154385#FAEPRAM212_RS04115The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0595501
Simplified PFAM architecture for RROC_0595501
PFAM domain coverage: 110 / 281 aa (39.1%)
1 aa281 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-112]
- Domain count: 1
- Matched identifier: RROC_0595501
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112
Cluster members and taxonomy
Representative gene: GCF_000154385#FAEPRAM212_RS04115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 485 · GCF_000154385
AssemblyASM15438v1 · Scaffoldreference genome · haploid
Genome composition3 127 383 bp · 56,0% GCFaecalibacterium prausnitzii M21/2
Signal transduction countsGenes 52 · HK 25 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key