1 HAMP#1
179-248 aa · 70 aa · 13.8% of protein
Raw token
HAMP:179:0.0000000000000415:248:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS46_RS05515
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_002549755
ClassHKTypeClassicLength506 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002549755#CGS46_RS05515Stable P2CS identifier used across views.
GenomeGCF_002549755Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length506 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 506 aa (48.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa506 aa
Domain-by-domain annotation3 items
2 HisKA#2
253-319 aa · 67 aa · 13.2% of protein
Raw token
HisKA:253:7.54e-19:319:67:643 HATPase_c#3
365-474 aa · 110 aa · 21.7% of protein
Raw token
HATPase_c:365:4.88e-30:474:110:109- Raw architecture: HAMP:179:0.0000000000000415:248:70:69#HisKA:253:7.54e-19:319:67:64#HATPase_c:365:4.88e-30:474:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002549755::NZ_NMTQ01000021.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span70531-72749Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS46_05495RefSeq proteinWP_097777058.1
Context group ID
GCF_002549755::NZ_NMTQ01000021.1::G00022Context members
CGS46_RS05515CGS46_RS05520
Partner locus tags
CGS46_RS05515CGS46_RS05520
Partner old locus tags
CGS46_05495CGS46_05500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_097777058.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS46_RS05515Primary locus identifier stored in the genes table.
Old locus tagCGS46_05495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTQ01000021.1Sequence record reported by the local genomic context database.
Genomic interval70 531-72 051 nt1 521 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span70 531-72 749 ntGCF_002549755::NZ_NMTQ01000021.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002549755::NZ_NMTQ01000021.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTQ01000021.1All displayed genes belong to this local TCS context.
Neighborhood span70 531-72 749 nt2 219 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 531 nt72 749 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CGS46_RS05515GCF_002549755#CGS46_RS05515
HKClassicCurrent focus
70 531-72 051 nt · Reverse (-)
CGS46_RS05520GCF_002549755#CGS46_RS05520
RROmpR
72 051-72 749 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002549755#CGS46_RS05515The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1444947
Simplified PFAM architecture for HKOC_1444947
PFAM domain coverage: 229 / 506 aa (45.3%)
1 aa506 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[197-248] | HisKA[253-319] | HATPase_c[366-475]
- Domain count: 3
- Matched identifier: HKOC_1444947
- Positioned domains: HAMP 197-248 ; HisKA 253-319 ; HATPase_c 366-475
Cluster members and taxonomy
Representative gene: GCF_002549755#CGS46_RS05515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002549755
AssemblyASM254975v1 · Scaffoldhaploid
Genome composition3 043 493 bp · 55,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 38 · HK 18 · RR 19CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key