1 Response_reg#1
4-114 aa · 111 aa · 48.7% of protein
Raw token
Response_reg:4:1.01e-42:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS46_RS04990
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_002549755
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002549755#CGS46_RS04990Stable P2CS identifier used across views.
GenomeGCF_002549755Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 228 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-222 aa · 74 aa · 32.5% of protein
Raw token
Trans_reg_C:149:1.39e-32:222:77:77- Raw architecture: Response_reg:4:1.01e-42:114:111:111#Trans_reg_C:149:1.39e-32:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002549755::NZ_NMTQ01000020.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span354912-357143Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS46_04970RefSeq proteinWP_044953253.1
Context group ID
GCF_002549755::NZ_NMTQ01000020.1::G00010Context members
CGS46_RS04985CGS46_RS04990
Partner locus tags
CGS46_RS04985CGS46_RS04990
Partner old locus tags
CGS46_04965CGS46_04970
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_044953253.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1BR38Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1BR38_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS46_RS04990Primary locus identifier stored in the genes table.
Old locus tagCGS46_04970Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTQ01000020.1Sequence record reported by the local genomic context database.
Genomic interval356 457-357 143 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span354 912-357 143 ntGCF_002549755::NZ_NMTQ01000020.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002549755::NZ_NMTQ01000020.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTQ01000020.1All displayed genes belong to this local TCS context.
Neighborhood span354 912-357 143 nt2 232 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
354 912 nt357 143 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CGS46_RS04985GCF_002549755#CGS46_RS04985
HKClassic
354 912-356 438 nt · Reverse (-)
CGS46_RS04990GCF_002549755#CGS46_RS04990
RROmpRCurrent focus
356 457-357 143 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000166035#HMPREF9436_RS00990Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1302290
Simplified PFAM architecture for RROC_1302290
PFAM domain coverage: 185 / 228 aa (81.1%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-114] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1302290
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; Trans_reg_C 149-222 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_000166035#HMPREF9436_RS00990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002549755
AssemblyASM254975v1 · Scaffoldhaploid
Genome composition3 043 493 bp · 55,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 38 · HK 18 · RR 19CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key