1 HisKA#1
399-466 aa · 68 aa · 10.8% of protein
Raw token
HisKA:399:0.0000000000162:466:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS46_RS00340
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_002549755
ClassHKTypeClassicLength627 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002549755#CGS46_RS00340Stable P2CS identifier used across views.
GenomeGCF_002549755Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length627 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 627 aa (28.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa627 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
511-619 aa · 109 aa · 17.4% of protein
Raw token
HATPase_c:511:3.33e-28:619:109:109- Raw architecture: HisKA:399:0.0000000000162:466:68:64#HATPase_c:511:3.33e-28:619:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002549755::NZ_NMTQ01000009.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16568-19154Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS46_00335RefSeq proteinWP_097776325.1
Context group ID
GCF_002549755::NZ_NMTQ01000009.1::G00023Context members
CGS46_RS00340CGS46_RS00345
Partner locus tags
CGS46_RS00340CGS46_RS00345
Partner old locus tags
CGS46_00335CGS46_00340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_097776325.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS46_RS00340Primary locus identifier stored in the genes table.
Old locus tagCGS46_00335Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTQ01000009.1Sequence record reported by the local genomic context database.
Genomic interval16 568-18 451 nt1 884 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 568-19 154 ntGCF_002549755::NZ_NMTQ01000009.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002549755::NZ_NMTQ01000009.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTQ01000009.1All displayed genes belong to this local TCS context.
Neighborhood span16 568-19 154 nt2 587 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 568 nt19 154 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CGS46_RS00340GCF_002549755#CGS46_RS00340
HKClassicCurrent focus
16 568-18 451 nt · Forward (+)
CGS46_RS00345GCF_002549755#CGS46_RS00345
RROmpR
18 444-19 154 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002549755#CGS46_RS00340The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0955674
Simplified PFAM architecture for HKOC_0955674
PFAM domain coverage: 285 / 627 aa (45.5%)
1 aa627 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[130-236] | HisKA[399-466] | HATPase_c[511-620]
- Domain count: 3
- Matched identifier: HKOC_0955674
- Positioned domains: DUF4118 130-236 ; HisKA 399-466 ; HATPase_c 511-620
Cluster members and taxonomy
Representative gene: GCF_002549755#CGS46_RS00340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002549755
AssemblyASM254975v1 · Scaffoldhaploid
Genome composition3 043 493 bp · 55,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 38 · HK 18 · RR 19CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key