1 Response_reg#1
3-117 aa · 115 aa · 56.4% of protein
Raw token
Response_reg:3:1.48e-20:117:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS17740
Response regulator NarL family
Eubacterium maltosivorans · GCF_002441855
ClassRRTypeNarLLength204 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002441855#CPZ25_RS17740Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length204 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 204 aa (83.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa204 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
135-190 aa · 56 aa · 27.5% of protein
Raw token
HTH_LUXR:135:0.00000000000000166:190:56:58- Raw architecture: Response_reg:3:1.48e-20:117:116:111#HTH_LUXR:135:0.00000000000000166:190:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002441855::NZ_CP029487.1::G00058
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3819994-3820608Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_017875RefSeq proteinWP_096919032.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00058Context members
CPZ25_RS17740
Partner locus tags
CPZ25_RS17740
Partner old locus tags
CPZ25_017875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_096919032.1Primary protein accession used for annex mappings.
UniProt accessionA0A4P9CBP7Primary UniProt accession resolved in the annex database.
UniProt IDA0A4P9CBP7_EUBMLDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS17740Primary locus identifier stored in the genes table.
Old locus tagCPZ25_017875Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval3 819 994-3 820 608 nt615 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 819 994-3 820 608 ntGCF_002441855::NZ_CP029487.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span3 819 994-3 820 608 nt615 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 819 994 nt3 820 608 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CPZ25_RS17740GCF_002441855#CPZ25_RS17740
RRNarLCurrent focus
3 819 994-3 820 608 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002441855#CPZ25_RS17740The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2099959
Simplified PFAM architecture for RROC_2099959
PFAM domain coverage: 168 / 204 aa (82.4%)
1 aa204 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-116] | GerE[136-189]
- Domain count: 2
- Matched identifier: RROC_2099959
- Positioned domains: Response_reg 3-116 ; Response_reg 3-116 ; GerE 136-189 ; GerE 136-189
Cluster members and taxonomy
Representative gene: GCF_002441855#CPZ25_RS17740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key