1 Response_reg#1
3-113 aa · 111 aa · 48.9% of protein
Raw token
Response_reg:3:9.16e-33:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS17410
Response regulator OmpR family
Eubacterium maltosivorans · GCF_002441855
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002441855#CPZ25_RS17410Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 227 aa (81.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-219 aa · 74 aa · 32.6% of protein
Raw token
Trans_reg_C:146:1.66e-26:219:77:77- Raw architecture: Response_reg:3:9.16e-33:113:111:111#Trans_reg_C:146:1.66e-26:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002441855::NZ_CP029487.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3763211-3765224Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_017545RefSeq proteinWP_096920054.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00057Context members
CPZ25_RS17410CPZ25_RS17415
Partner locus tags
CPZ25_RS17410CPZ25_RS17415
Partner old locus tags
CPZ25_017545CPZ25_017550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_096920054.1Primary protein accession used for annex mappings.
UniProt accessionA0A4V1GMF0Primary UniProt accession resolved in the annex database.
UniProt IDA0A4V1GMF0_EUBMLDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS17410Primary locus identifier stored in the genes table.
Old locus tagCPZ25_017545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval3 763 211-3 763 894 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 763 211-3 765 224 ntGCF_002441855::NZ_CP029487.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span3 763 211-3 765 224 nt2 014 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 763 211 nt3 765 224 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CPZ25_RS17410GCF_002441855#CPZ25_RS17410
RROmpRCurrent focus
3 763 211-3 763 894 nt · Forward (+)
CPZ25_RS17415GCF_002441855#CPZ25_RS17415
HKClassic
3 763 881-3 765 224 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020559625#LI142_RS05945Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1327966
Simplified PFAM architecture for RROC_1327966
PFAM domain coverage: 184 / 228 aa (80.7%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[147-219]
- Domain count: 2
- Matched identifier: RROC_1327966
- Positioned domains: Response_reg 3-113 ; Trans_reg_C 147-219
Cluster members and taxonomy
Representative gene: GCF_020559625#LI142_RS05945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key