1 Response_reg#1
3-110 aa · 108 aa · 44.4% of protein
Raw token
Response_reg:3:4.75e-17:110:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS16805
Response regulator LytTR family
Eubacterium maltosivorans · GCF_002441855
ClassRRTypeLytTRLength243 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002441855#CPZ25_RS16805Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 243 aa (77.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa243 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-221 aa · 81 aa · 33.3% of protein
Raw token
LytTR:141:0.0000000000302:221:86:98- Raw architecture: Response_reg:3:4.75e-17:110:108:111#LytTR:141:0.0000000000302:221:86:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002441855::NZ_CP029487.1::G00055
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3635689-3636420Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_016925RefSeq proteinWP_096920124.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00055Context members
CPZ25_RS16805
Partner locus tags
CPZ25_RS16805
Partner old locus tags
CPZ25_016925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_096920124.1Primary protein accession used for annex mappings.
UniProt accessionA0A4V1GMD8Primary UniProt accession resolved in the annex database.
UniProt IDA0A4V1GMD8_EUBMLDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS16805Primary locus identifier stored in the genes table.
Old locus tagCPZ25_016925Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval3 635 689-3 636 420 nt732 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 635 689-3 636 420 ntGCF_002441855::NZ_CP029487.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span3 635 689-3 636 420 nt732 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 635 689 nt3 636 420 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CPZ25_RS16805GCF_002441855#CPZ25_RS16805
RRLytTRCurrent focus
3 635 689-3 636 420 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002441855#CPZ25_RS16805The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0828479
Simplified PFAM architecture for RROC_0828479
PFAM domain coverage: 192 / 243 aa (79.0%)
1 aa243 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[11-114] | LytTR[141-228]
- Domain count: 2
- Matched identifier: RROC_0828479
- Positioned domains: Response_reg 11-114 ; Response_reg 11-114 ; LytTR 141-228 ; LytTR 141-228
Cluster members and taxonomy
Representative gene: GCF_002441855#CPZ25_RS16805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key