1 Response_reg#1
4-123 aa · 120 aa · 50.2% of protein
Raw token
Response_reg:4:0.00000000000417:123:122:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS14530
Response regulator LytTR family
Eubacterium maltosivorans · GCF_002441855
ClassRRTypeLytTRLength239 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002441855#CPZ25_RS14530Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage211 / 239 aa (88.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 LytTR#2
142-232 aa · 91 aa · 38.1% of protein
Raw token
LytTR:142:5.11e-18:232:96:98- Raw architecture: Response_reg:4:0.00000000000417:123:122:111#LytTR:142:5.11e-18:232:96:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002441855::NZ_CP029487.1::G00050
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3134293-3135012Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_014645RefSeq proteinWP_167495244.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00050Context members
CPZ25_RS14530
Partner locus tags
CPZ25_RS14530
Partner old locus tags
CPZ25_014645
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_167495244.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS14530Primary locus identifier stored in the genes table.
Old locus tagCPZ25_014645Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval3 134 293-3 135 012 nt720 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 134 293-3 135 012 ntGCF_002441855::NZ_CP029487.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span3 134 293-3 135 012 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 134 293 nt3 135 012 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CPZ25_RS14530GCF_002441855#CPZ25_RS14530
RRLytTRCurrent focus
3 134 293-3 135 012 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002441855#CPZ25_RS14530The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0911362
Simplified PFAM architecture for RROC_0911362
PFAM domain coverage: 181 / 239 aa (75.7%)
1 aa239 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[30-122] | LytTR[144-231]
- Domain count: 2
- Matched identifier: RROC_0911362
- Positioned domains: Response_reg 30-122 ; Response_reg 30-122 ; LytTR 144-231 ; LytTR 144-231
Cluster members and taxonomy
Representative gene: GCF_002441855#CPZ25_RS14530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key