1 Response_reg#1
5-117 aa · 113 aa · 31.6% of protein
Raw token
Response_reg:5:7.94e-31:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS10650
Response regulator, unclassified
Eubacterium maltosivorans · GCF_002441855
ClassRRTypeunclassifiedLength358 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002441855#CPZ25_RS10650Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length358 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 358 aa (54.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa358 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
250-291 aa · 42 aa · 11.7% of protein
Raw token
HTH_AraC:250:0.000000823:291:42:423 HTH_AraC#3
303-341 aa · 39 aa · 10.9% of protein
Raw token
HTH_AraC:303:0.00000000221:341:39:42- Raw architecture: Response_reg:5:7.94e-31:117:113:111#HTH_AraC:250:0.000000823:291:42:42#HTH_AraC:303:0.00000000221:341:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002441855::NZ_CP029487.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2208059-2210393Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_010735RefSeq proteinWP_058693381.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00037Context members
CPZ25_RS10650CPZ25_RS10655
Partner locus tags
CPZ25_RS10650CPZ25_RS10655
Partner old locus tags
CPZ25_010735CPZ25_010740
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_058693381.1Primary protein accession used for annex mappings.
UniProt accessionA0A4P9CAD1Primary UniProt accession resolved in the annex database.
UniProt IDA0A4P9CAD1_EUBMLDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS10650Primary locus identifier stored in the genes table.
Old locus tagCPZ25_010735Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval2 208 059-2 209 135 nt1 077 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 208 059-2 210 393 ntGCF_002441855::NZ_CP029487.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span2 208 059-2 210 393 nt2 335 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 208 059 nt2 210 393 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CPZ25_RS10650GCF_002441855#CPZ25_RS10650
RRunclassifiedCurrent focus
2 208 059-2 209 135 nt · Reverse (-)
CPZ25_RS10655GCF_002441855#CPZ25_RS10655
HKClassic
2 209 128-2 210 393 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002441855#CPZ25_RS10650The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0462419
Simplified PFAM architecture for RROC_0462419
PFAM domain coverage: 189 / 358 aa (52.8%)
1 aa358 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[265-341]
- Domain count: 2
- Matched identifier: RROC_0462419
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; HTH_18 265-341 ; HTH_18 265-341
Cluster members and taxonomy
Representative gene: GCF_002441855#CPZ25_RS10650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key