1 Response_reg#1
4-115 aa · 112 aa · 54.6% of protein
Raw token
Response_reg:4:5.43e-21:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS09035
Response regulator NarL family
Eubacterium maltosivorans · GCF_002441855
ClassRRTypeNarLLength205 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002441855#CPZ25_RS09035Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length205 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 205 aa (80.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa205 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
138-190 aa · 53 aa · 25.9% of protein
Raw token
HTH_LUXR:138:0.0000000000000561:190:53:58- Raw architecture: Response_reg:4:5.43e-21:115:112:111#HTH_LUXR:138:0.0000000000000561:190:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002441855::NZ_CP029487.1::G00036
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1892612-1893229Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_009110RefSeq proteinWP_058693590.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00036Context members
CPZ25_RS09035
Partner locus tags
CPZ25_RS09035
Partner old locus tags
CPZ25_009110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_058693590.1Primary protein accession used for annex mappings.
UniProt accessionA0A4P9C7N5Primary UniProt accession resolved in the annex database.
UniProt IDA0A4P9C7N5_EUBMLDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS09035Primary locus identifier stored in the genes table.
Old locus tagCPZ25_009110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval1 892 612-1 893 229 nt618 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 892 612-1 893 229 ntGCF_002441855::NZ_CP029487.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span1 892 612-1 893 229 nt618 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 892 612 nt1 893 229 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CPZ25_RS09035GCF_002441855#CPZ25_RS09035
RRNarLCurrent focus
1 892 612-1 893 229 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002441855#CPZ25_RS09035The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2092004
Simplified PFAM architecture for RROC_2092004
PFAM domain coverage: 164 / 205 aa (80.0%)
1 aa205 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-114] | GerE[138-190]
- Domain count: 2
- Matched identifier: RROC_2092004
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; GerE 138-190 ; GerE 138-190
Cluster members and taxonomy
Representative gene: GCF_002441855#CPZ25_RS09035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key