1 Response_reg#1
3-113 aa · 111 aa · 46.6% of protein
Raw token
Response_reg:3:5.31e-19:113:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS08005
Response regulator LytTR family
Eubacterium maltosivorans · GCF_002441855
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002441855#CPZ25_RS08005Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage198 / 238 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-226 aa · 87 aa · 36.6% of protein
Raw token
LytTR:140:0.00000000000353:226:92:98- Raw architecture: Response_reg:3:5.31e-19:113:113:111#LytTR:140:0.00000000000353:226:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002441855::NZ_CP029487.1::G00032
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1626951-1627667Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_008070RefSeq proteinWP_074618463.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00032Context members
CPZ25_RS08005
Partner locus tags
CPZ25_RS08005
Partner old locus tags
CPZ25_008070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_074618463.1Primary protein accession used for annex mappings.
UniProt accessionA0A4V1GLX3Primary UniProt accession resolved in the annex database.
UniProt IDA0A4V1GLX3_EUBMLDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS08005Primary locus identifier stored in the genes table.
Old locus tagCPZ25_008070Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval1 626 951-1 627 667 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 626 951-1 627 667 ntGCF_002441855::NZ_CP029487.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span1 626 951-1 627 667 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 626 951 nt1 627 667 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CPZ25_RS08005GCF_002441855#CPZ25_RS08005
RRLytTRCurrent focus
1 626 951-1 627 667 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002441855#CPZ25_RS08005The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0938596
Simplified PFAM architecture for RROC_0938596
PFAM domain coverage: 199 / 238 aa (83.6%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-114] | LytTR[140-226]
- Domain count: 2
- Matched identifier: RROC_0938596
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; LytTR 140-226 ; LytTR 140-226
Cluster members and taxonomy
Representative gene: GCF_002441855#CPZ25_RS08005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key