1 HAMP#1
175-244 aa · 70 aa · 11.7% of protein
Raw token
HAMP:175:0.0000000000262:244:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS07700
Histidine kinase, Classic
Eubacterium maltosivorans · GCF_002441855
ClassHKTypeClassicLength600 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002441855#CPZ25_RS07700Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length600 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage252 / 600 aa (42.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa600 aa
Domain-by-domain annotation3 items
2 HisKA#2
361-429 aa · 69 aa · 11.5% of protein
Raw token
HisKA:361:2.06e-16:429:69:643 HATPase_c#3
474-586 aa · 113 aa · 18.8% of protein
Raw token
HATPase_c:474:5.66e-29:586:113:109- Raw architecture: HAMP:175:0.0000000000262:244:70:69#HisKA:361:2.06e-16:429:69:64#HATPase_c:474:5.66e-29:586:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002441855::NZ_CP029487.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1553948-1556436Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_007765RefSeq proteinWP_058693822.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00031Context members
CPZ25_RS07695CPZ25_RS07700
Partner locus tags
CPZ25_RS07695CPZ25_RS07700
Partner old locus tags
CPZ25_007760CPZ25_007765
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_058693822.1Primary protein accession used for annex mappings.
UniProt accessionA0A4P9C717Primary UniProt accession resolved in the annex database.
UniProt IDA0A4P9C717_EUBMLDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS07700Primary locus identifier stored in the genes table.
Old locus tagCPZ25_007765Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval1 554 634-1 556 436 nt1 803 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 553 948-1 556 436 ntGCF_002441855::NZ_CP029487.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span1 553 948-1 556 436 nt2 489 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 553 948 nt1 556 436 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CPZ25_RS07695GCF_002441855#CPZ25_RS07695
RROmpR
1 553 948-1 554 634 nt · Forward (+)
CPZ25_RS07700GCF_002441855#CPZ25_RS07700
HKClassicCurrent focus
1 554 634-1 556 436 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002441855#CPZ25_RS07700The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1053379
Simplified PFAM architecture for HKOC_1053379
PFAM domain coverage: 226 / 600 aa (37.7%)
1 aa600 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[194-243] | HisKA[362-424] | HATPase_c[474-586]
- Domain count: 3
- Matched identifier: HKOC_1053379
- Positioned domains: HAMP 194-243 ; HisKA 362-424 ; HATPase_c 474-586
Cluster members and taxonomy
Representative gene: GCF_002441855#CPZ25_RS07700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key