1 Response_reg#1
5-118 aa · 114 aa · 36.7% of protein
Raw token
Response_reg:5:1.62e-23:118:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS06490
Response regulator, PleD family
Eubacterium maltosivorans · GCF_002441855
ClassRRTypePleDLength311 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002441855#CPZ25_RS06490Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regGGDEF
Protein length311 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage262 / 311 aa (84.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa311 aa
Domain-by-domain annotation2 items
2 GGDEF#2
140-287 aa · 148 aa · 47.6% of protein
Raw token
GGDEF:140:3.47e-44:287:156:160- Raw architecture: Response_reg:5:1.62e-23:118:116:111#GGDEF:140:3.47e-44:287:156:160
- Domain description: 1 Response_reg,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002441855::NZ_CP029487.1::G00029
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1333121-1334056Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_006545RefSeq proteinWP_058693972.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00029Context members
CPZ25_RS06490
Partner locus tags
CPZ25_RS06490
Partner old locus tags
CPZ25_006545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_058693972.1Primary protein accession used for annex mappings.
UniProt accessionA0A4P9C6A0Primary UniProt accession resolved in the annex database.
UniProt IDA0A4P9C6A0_EUBMLDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS06490Primary locus identifier stored in the genes table.
Old locus tagCPZ25_006545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval1 333 121-1 334 056 nt936 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 333 121-1 334 056 ntGCF_002441855::NZ_CP029487.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span1 333 121-1 334 056 nt936 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 333 121 nt1 334 056 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CPZ25_RS06490GCF_002441855#CPZ25_RS06490
RRPleDCurrent focus
1 333 121-1 334 056 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002441855#CPZ25_RS06490The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0549783
Simplified PFAM architecture for RROC_0549783
PFAM domain coverage: 262 / 311 aa (84.2%)
1 aa311 aa
Response_regGGDEF
- Simplified architecture: Response_reg + GGDEF
- Raw architecture: Response_reg[5-117] | GGDEF[138-286]
- Domain count: 2
- Matched identifier: RROC_0549783
- Positioned domains: Response_reg 5-117 ; Response_reg 5-117 ; GGDEF 138-286 ; GGDEF 138-286
Cluster members and taxonomy
Representative gene: GCF_002441855#CPZ25_RS06490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key