1 Response_reg#1
4-110 aa · 107 aa · 30.7% of protein
Raw token
Response_reg:4:5.87e-28:110:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS03930
Response regulator, unclassified
Eubacterium maltosivorans · GCF_002441855
ClassRRTypeunclassifiedLength349 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002441855#CPZ25_RS03930Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length349 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage141 / 349 aa (40.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa349 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
310-343 aa · 34 aa · 9.7% of protein
Raw token
HTH_AraC:310:0.00000012:343:34:42- Raw architecture: Response_reg:4:5.87e-28:110:107:111#HTH_AraC:310:0.00000012:343:34:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002441855::NZ_CP029487.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span785383-786432Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_003955RefSeq proteinWP_096919812.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00023Context members
CPZ25_RS03930
Partner locus tags
CPZ25_RS03930
Partner old locus tags
CPZ25_003955
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_096919812.1Primary protein accession used for annex mappings.
UniProt accessionA0A4P9C513Primary UniProt accession resolved in the annex database.
UniProt IDA0A4P9C513_EUBMLDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS03930Primary locus identifier stored in the genes table.
Old locus tagCPZ25_003955Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval785 383-786 432 nt1 050 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span785 383-786 432 ntGCF_002441855::NZ_CP029487.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span785 383-786 432 nt1 050 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
785 383 nt786 432 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CPZ25_RS03930GCF_002441855#CPZ25_RS03930
RRunclassifiedCurrent focus
785 383-786 432 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002441855#CPZ25_RS03930The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0482971
Simplified PFAM architecture for RROC_0482971
PFAM domain coverage: 191 / 349 aa (54.7%)
1 aa349 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[266-344]
- Domain count: 2
- Matched identifier: RROC_0482971
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 266-344 ; HTH_18 266-344
Cluster members and taxonomy
Representative gene: GCF_002441855#CPZ25_RS03930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key