1 Response_reg#1
3-103 aa · 101 aa · 49.0% of protein
Raw token
Response_reg:3:6.22e-23:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS03670
Response regulator NarL family
Eubacterium maltosivorans · GCF_002441855
ClassRRTypeNarLLength206 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002441855#CPZ25_RS03670Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length206 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 206 aa (74.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa206 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-201 aa · 53 aa · 25.7% of protein
Raw token
HTH_LUXR:149:1.25e-19:201:53:58- Raw architecture: Response_reg:3:6.22e-23:103:101:111#HTH_LUXR:149:1.25e-19:201:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002441855::NZ_CP029487.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span739985-741668Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_003695RefSeq proteinWP_096919840.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00020Context members
CPZ25_RS03670CPZ25_RS03675
Partner locus tags
CPZ25_RS03670CPZ25_RS03675
Partner old locus tags
CPZ25_003695CPZ25_003700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_096919840.1Primary protein accession used for annex mappings.
UniProt accessionA0A4P9C541Primary UniProt accession resolved in the annex database.
UniProt IDA0A4P9C541_EUBMLDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS03670Primary locus identifier stored in the genes table.
Old locus tagCPZ25_003695Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval739 985-740 605 nt621 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span739 985-741 668 ntGCF_002441855::NZ_CP029487.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span739 985-741 668 nt1 684 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
739 985 nt741 668 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CPZ25_RS03670GCF_002441855#CPZ25_RS03670
RRNarLCurrent focus
739 985-740 605 nt · Reverse (-)
CPZ25_RS03675GCF_002441855#CPZ25_RS03675
HKClassic
740 586-741 668 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002441855#CPZ25_RS03670The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2082793
Simplified PFAM architecture for RROC_2082793
PFAM domain coverage: 155 / 206 aa (75.2%)
1 aa206 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[149-201]
- Domain count: 2
- Matched identifier: RROC_2082793
- Positioned domains: Response_reg 3-104 ; Response_reg 3-104 ; GerE 149-201 ; GerE 149-201
Cluster members and taxonomy
Representative gene: GCF_002441855#CPZ25_RS03670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key