1 Response_reg#1
10-122 aa · 113 aa · 15.7% of protein
Raw token
Response_reg:10:1e-24:122:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS02975
Response regulator, RpfG family
Eubacterium maltosivorans · GCF_002441855
ClassRRTypeRpfGLength720 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002441855#CPZ25_RS02975Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length720 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage394 / 720 aa (54.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa720 aa
Domain-by-domain annotation3 items
2 HD#2
179-310 aa · 132 aa · 18.3% of protein
Raw token
HD:179:0.00000000000839:310:132:1103 GGDEF#3
532-680 aa · 149 aa · 20.7% of protein
Raw token
GGDEF:532:2.71e-42:680:157:160- Raw architecture: Response_reg:10:1e-24:122:114:111#HD:179:0.00000000000839:310:132:110#GGDEF:532:2.71e-42:680:157:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002441855::NZ_CP029487.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span591525-593687Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_003000RefSeq proteinWP_096919921.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00019Context members
CPZ25_RS02975
Partner locus tags
CPZ25_RS02975
Partner old locus tags
CPZ25_003000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_096919921.1Primary protein accession used for annex mappings.
UniProt accessionA0A4P9C4X6Primary UniProt accession resolved in the annex database.
UniProt IDA0A4P9C4X6_EUBMLDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS02975Primary locus identifier stored in the genes table.
Old locus tagCPZ25_003000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval591 525-593 687 nt2 163 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span591 525-593 687 ntGCF_002441855::NZ_CP029487.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span591 525-593 687 nt2 163 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
591 525 nt593 687 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CPZ25_RS02975GCF_002441855#CPZ25_RS02975
RRRpfGCurrent focus
591 525-593 687 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002441855#CPZ25_RS02975The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0024687
Simplified PFAM architecture for RROC_0024687
PFAM domain coverage: 395 / 720 aa (54.9%)
1 aa720 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[10-122] | HD_5[201-331] | GGDEF[530-680]
- Domain count: 3
- Matched identifier: RROC_0024687
- Positioned domains: Response_reg 10-122 ; Response_reg 10-122 ; HD_5 201-331 ; HD_5 201-331 ; GGDEF 530-680 ; GGDEF 530-680
Cluster members and taxonomy
Representative gene: GCF_002441855#CPZ25_RS02975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key