1 HAMP#1
192-261 aa · 70 aa · 14.2% of protein
Raw token
HAMP:192:0.00000000912:261:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS02940
Histidine kinase, Classic
Eubacterium maltosivorans · GCF_002441855
ClassHKTypeClassicLength494 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002441855#CPZ25_RS02940Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length494 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 494 aa (49.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa494 aa
Domain-by-domain annotation3 items
2 HisKA#2
266-329 aa · 64 aa · 13.0% of protein
Raw token
HisKA:266:3.21e-20:329:64:643 HATPase_c#3
374-483 aa · 110 aa · 22.3% of protein
Raw token
HATPase_c:374:8.35e-23:483:110:109- Raw architecture: HAMP:192:0.00000000912:261:70:69#HisKA:266:3.21e-20:329:64:64#HATPase_c:374:8.35e-23:483:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002441855::NZ_CP029487.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span583084-585226Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_002960RefSeq proteinWP_096919926.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00018Context members
CPZ25_RS02935CPZ25_RS02940
Partner locus tags
CPZ25_RS02935CPZ25_RS02940
Partner old locus tags
CPZ25_002955CPZ25_002960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_096919926.1Primary protein accession used for annex mappings.
UniProt accessionA0A4P9C4P1Primary UniProt accession resolved in the annex database.
UniProt IDA0A4P9C4P1_EUBMLDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS02940Primary locus identifier stored in the genes table.
Old locus tagCPZ25_002960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval583 742-585 226 nt1 485 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span583 084-585 226 ntGCF_002441855::NZ_CP029487.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span583 084-585 226 nt2 143 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
583 084 nt585 226 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CPZ25_RS02935GCF_002441855#CPZ25_RS02935
RROmpR
583 084-583 752 nt · Forward (+)
CPZ25_RS02940GCF_002441855#CPZ25_RS02940
HKClassicCurrent focus
583 742-585 226 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002441855#CPZ25_RS02940The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1510559
Simplified PFAM architecture for HKOC_1510559
PFAM domain coverage: 224 / 494 aa (45.3%)
1 aa494 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[210-260] | HisKA[266-329] | HATPase_c[375-483]
- Domain count: 3
- Matched identifier: HKOC_1510559
- Positioned domains: HAMP 210-260 ; HisKA 266-329 ; HATPase_c 375-483
Cluster members and taxonomy
Representative gene: GCF_002441855#CPZ25_RS02940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key